Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2114 ATGATCATTCTCATGATGATGATGATTCCCCCGTCGTGGTCGTCGTCTTCTTCTTCAGCTCCTTCTCTGCCACCCCATCATCTTCGCTTCCACCATTTGGCCCCATCTCCTTCTCCGGCACCGGCCCCGTCTCTGGCCATCCCTTCCCCAACTCTGCTTCCGGCACCTGTCAGCAAAGAATCACCCCTGCCCTCAAAGCTGTCGGTTGACTTCAGTCCACCTCTGATTGCAATGGTGGTCGTTGTTGCCGCCGCCTTCCTCGTCGTCACCTATTCCCGCCTCATCTCCCGCCGCCTCATGCCTCCCATAATCCGCCTCACTCGACGGTGGCGCCGCCGTAGGAGACGTTCCTACCTCCCTTCTTCCTCCGGCGACCTCGACTCACTTCCTTATGATTCTCCTTTTGAGCCAATTGATGGCCCTTATATGTTCTCCCCTTATGGCCTCGACGAGTCCATCATCAAGACCATACCTTTTTCCCTCTACACCGCCAAATCCAAGGATCAATTCGAAGAGTCTCGACGCGATTGCGCGGTTTGTTTGTTGGAGTTCGAAGATGACGAGTACGTCCGAACGCTGCCGTTTTGTTCTCACACTTTTCACCTCGATTGTATCGACGTTTGGCTCAGGTCGCACGCCAATTGCCCCCTCTGCCGCGCCGGAGTTCTGTGCACGGAGTCCCCGTTCACGCCAATGATGGCGGCGAGGATTCGGCCGAGCCTCGACGACGACACGATTTTGCATAGATTAAGTATGGACCCTTTGGTCGAAGCTCCACCGCCGGTGGCTCATTCGCTGGTGTCGGAGATCACTCCGTGCAACGAAGAGCAATCGCCGAGAACGAACCACGCGAATCCGGAGGACGATCGATTCAATGGCGGTCGTGATTTCCTCCTGAAGCGGTCCTACTCGTTCGGATTCGAACGGAGCTTGGCGTCGGAGAGAATGGTGATGGAGCCGGCGACGGCGTCGCCGTGGCGGTACCACCGAAGGGGAAGCAGCAGCAGCTTCTGGAGCAAAAGGCCATCACCGTTCGGATCGTTGGGAAAGTCGAGAGTGTTCTCGTTCAGATACTACAGAGGGATGAAGTCGCCGTTCTTCCGGAGACGAGGGTTCTTCCCTCTGTCGGAGTCAAGCATGAGGTCATACAACGGAGGAGGAGGAGGAGGAAGCTCGTCTCGGAGAAGCAAGTCGATAGCAAGCCCGATGTTCCTGAGGTCGTCAGCGGCGCTGGCGGCGGTGGGAGCAGCAGCGTTCTCGTCGAGCCGGCTGAGGTGCGGCGACCCGGAGGCATTGCTGTCACCGGAGAGATACAGCAGGAGATAA 1326 0.5747 MIILMMMMIPPSWSSSSSSAPSLPPHHLRFHHLAPSPSPAPAPSLAIPSPTLLPAPVSKESPLPSKLSVDFSPPLIAMVVVVAAAFLVVTYSRLISRRLMPPIIRLTRRWRRRRRRSYLPSSSGDLDSLPYDSPFEPIDGPYMFSPYGLDESIIKTIPFSLYTAKSKDQFEESRRDCAVCLLEFEDDEYVRTLPFCSHTFHLDCIDVWLRSHANCPLCRAGVLCTESPFTPMMAARIRPSLDDDTILHRLSMDPLVEAPPPVAHSLVSEITPCNEEQSPRTNHANPEDDRFNGGRDFLLKRSYSFGFERSLASERMVMEPATASPWRYHRRGSSSSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSMRSYNGGGGGGSSSRRSKSIASPMFLRSSAALAAVGAAAFSSSRLRCGDPEALLSPERYSRR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2114 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 223 IPR013083 -
Alju02g2114 441 SUPERFAMILY RING/U-box 164 224 - -
Alju02g2114 441 FunFam RING-H2 finger protein ATL65 142 223 - -
Alju02g2114 441 PANTHER RING-H2 FINGER PROTEIN ATL16 56 244 IPR044600 GO:0016567|GO:0016740
Alju02g2114 441 Pfam Ring finger domain 176 219 IPR001841 -
Alju02g2114 441 SMART ring_2 177 218 IPR001841 -
Alju02g2114 441 ProSiteProfiles Zinc finger RING-type profile. 177 219 IPR001841 -
Alju02g2114 441 CDD RING-H2_EL5-like 176 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2114 Alju-ChrAlju02 20559268 20560593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2114 69 441 C3H Transcription Factor Family AT3G18930 53.580 4.64e-97 295