Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2099 ATGGACGAGGGAGCAAATCGCCGGCGGCGATCAAGCCTTCCGGAGGGGAAACCGGCGCACTTTTTCAAGATAATACTTCCTACTACGATTCTTGACAAAAAAATGAGATTTCCTAAGACGTTTGTGAATCATCACGGGGATGATTTCTCTCCTATTATTACTTTACACGATCCTAATGCTCGAGAATGGAAAATTGGTTTGGATAAGATTGAAGAAGATGATGACCTTTGTTTCTCAGAAGGTTGGGAAAACTTCATGGAATACTATTCCCTCACCGAAGTACACTTTCTGGTTTTCAGATATGAAGGAGATTCAAAATTCCAGGTTCTAATATTTGACATGACTGGATCAGAAATTCAATATCCTTCTCAGAATTCAAGCCCCGAGAGAAACCAAGTTGCCTCATCGGGATCACCAAAGAGAAACGGCCATGTTCATCATCAGAGTCAAAATCACAATGATAATAATGACGGTGGTGGTGGTAGTGAAGGTGGCGGCAGTGATCATCATCAGAGTCAAAATCATAATGACAGTGGTAGGAGAAACCAGGTTGCTTCATCAGGATCACCAAAGGGCAACAACCATGTTCATCATCAGAGTGAAAATCATGATGTTGAAAATGGCGGCGGCGGCGGCGATCATCAAAATCGGAATGATAACGGTGGTGGTGGTGACGACGATGAAGGTGGTCGGAGAAACCAGGTTGCCTCATCAGAATCATCAAAGAGCAATGGTCATGATCGTCATTGGAGTCAAGATTATAATGATAATGATGTTGGTGGTAGTGGTGAGGGCGGTGGTGGCAGCCATTGCCGTGGCCGGGGCGGCGACATCTATCACTTTACTGAAGAATATTTTCCTGATGACGAGGATGATTCTACTCATGATGCACATGAAGAAGATAATTTCTACTATAGCATTTCTTTATCTAAATCCGCCTCTACTTCTCCATCTAAATCCACTTCACCAGCAACAACAAAAAGACGAGGCTTCACCAAATTCATAGATCAACCATCAAGAAGAGAAAGAAGAAAACAGCATTCTCCTCCCCCTTCCTCAAAAAGAAAGAGGCATGAACATAGTAGTGACAGTGAAAGTGATGAACAAAGTGATGGAGGTTCAAATAGTAGCAGAAGAAGAAGAAGAAGATCGATAGAAGAAAGACGCAGAGGAAGAGAAAAGAAATCAAACCACCAAGTGGAATGGCTTCGCAAACAAACATTGATATCAAAATCATACAAAAAGAGACACATATCAGAAAGAGCAAGAGCCAAGGTTATTGGAGCTGCAGACAGCTACAAACCAGAGTTTCCTTCTTTCAGGGCAGTCTTGAGGCCTCACAACTTATACAACAGTATAGTGTATGTGCCAGCAAGTTTTGCAGTGAAGTATTTGGGAAAAGGGTCAGGGAAGATAAGATTGGAGAACGTGAAGGGAAAACAGTGGGAAGCTAGATGCTTGCGCAAGAATGGATCAGGCAATGGAATGAGCATAGGAGAAGGGTGGGGTAAGTTTAAGATGGACAATGAAGTTAAGGAAGGAGATGTGTGTGTGTTTGAACTTGTGAACAAAAGAGATATTTTGTTGAGAGTTCAGATATTTCGTGTCAGACAATATGCAGATCGCTGA 1629 0.4242 MDEGANRRRRSSLPEGKPAHFFKIILPTTILDKKMRFPKTFVNHHGDDFSPIITLHDPNAREWKIGLDKIEEDDDLCFSEGWENFMEYYSLTEVHFLVFRYEGDSKFQVLIFDMTGSEIQYPSQNSSPERNQVASSGSPKRNGHVHHQSQNHNDNNDGGGGSEGGGSDHHQSQNHNDSGRRNQVASSGSPKGNNHVHHQSENHDVENGGGGGDHQNRNDNGGGGDDDEGGRRNQVASSESSKSNGHDRHWSQDYNDNDVGGSGEGGGGSHCRGRGGDIYHFTEEYFPDDEDDSTHDAHEEDNFYYSISLSKSASTSPSKSTSPATTKRRGFTKFIDQPSRRERRKQHSPPPSSKRKRHEHSSDSESDEQSDGGSNSSRRRRRRSIEERRRGREKKSNHQVEWLRKQTLISKSYKKRHISERARAKVIGAADSYKPEFPSFRAVLRPHNLYNSIVYVPASFAVKYLGKGSGKIRLENVKGKQWEARCLRKNGSGNGMSIGEGWGKFKMDNEVKEGDVCVFELVNKRDILLRVQIFRVRQYADR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2099 542 Gene3D - 13 116 IPR015300 -
Alju02g2099 542 SUPERFAMILY DNA-binding pseudobarrel domain 433 535 IPR015300 -
Alju02g2099 542 ProSiteProfiles B3 DNA-binding domain profile. 20 115 IPR003340 GO:0003677
Alju02g2099 542 SMART B3_2 440 537 IPR003340 GO:0003677
Alju02g2099 542 SMART B3_2 21 115 IPR003340 GO:0003677
Alju02g2099 542 MobiDBLite consensus disorder prediction 310 328 - -
Alju02g2099 542 MobiDBLite consensus disorder prediction 355 381 - -
Alju02g2099 542 MobiDBLite consensus disorder prediction 152 195 - -
Alju02g2099 542 MobiDBLite consensus disorder prediction 310 399 - -
Alju02g2099 542 CDD B3_DNA 20 113 IPR003340 GO:0003677
Alju02g2099 542 SUPERFAMILY DNA-binding pseudobarrel domain 16 114 IPR015300 -
Alju02g2099 542 Pfam B3 DNA binding domain 21 113 IPR003340 GO:0003677
Alju02g2099 542 Pfam B3 DNA binding domain 444 535 IPR003340 GO:0003677
Alju02g2099 542 MobiDBLite consensus disorder prediction 196 210 - -
Alju02g2099 542 Gene3D - 418 540 IPR015300 -
Alju02g2099 542 MobiDBLite consensus disorder prediction 120 275 - -
Alju02g2099 542 ProSiteProfiles B3 DNA-binding domain profile. 439 537 IPR003340 GO:0003677
Alju02g2099 542 CDD B3_DNA 438 535 IPR003340 GO:0003677
Alju02g2099 542 MobiDBLite consensus disorder prediction 219 233 - -
Alju02g2099 542 PANTHER B3 DOMAIN-CONTAINING 14 532 - -
Alju02g2099 542 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2099 Alju-ChrAlju02 20361643 20364172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2099 410 540 REM Transcription Factor Family AT1G49480 43.939 3.56e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju02g2099 B3 5.7e-18 CL0405