Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2098 ATGCCGCGTCCTTGTTTTCACAAGCTTATTCTTCCATCCACCGTCCAAGCCGGCCAACTGAGGGTTCCAGATTATTTTTTGAGGAAGTTTGGGGGGGAGCTCTCTACAATTGCCACCCTCAGTGTTCCTGATGGCAGTGTCTGGCGTATTTGTATAAAAAAGGCAGACAACAAATTTTGGCTCCATGATGGTTGGAAGGAGTTCGTTCAACGTTACTCCATTGGTGTCGGATGCTTTTTGGTGTTCGGATATGAAGGGAATTCATCTTTTAATGTTCATATTTTCAATTTGGCTGCTTCTGAGATAAACTATCAATTAGCCAATCGAAATAGTGATGAAAGGCCTTACTTTTCCAACCAACATATTTTTGATGAAATGGAAGATGAAGATTCCATTGAGTTCTTTGATTCAACACCGTCATATCTAACCCCTGGTGCATTTAATAACAAGGTTATGGCTGGATCTGCAGATCAATTGACACCTGGCAAGAATTATACTCCTTCACCATTGCAGAATTTGTTTAATGGGTCTAAACTTAATAGCATAAACTGGGGAGACACTATTTCTTCAAAGGATGCCAATTCACAAAACAATCAATTGACCAGAGATAAAGGTGTTCAGTTCAATGCAGCCGAGTTTAAAAGATCCACTGAAGAGTTGAAATTGCGCGCCTCCAATAATGAAATGCAGAGAGTTAAAAAAACTGCAAGAAAAAGGCGGAAACCTGATCCTGATGGTGAAGAATCCTCTCCTCATCACGAAGAGGAGGTAGAAATGCGTTTTAGGTTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCGGAAGAAAGAGAAAGGGCAGTTAATGCTGCAAAAGCATATGAACCGCCTAATCCTTTCTGCAGGGTTGTCCTGCGGCCCTCCTATCTGTATAGGGGATGCATAATGTATTTGCCATCTGGCTTTGCAGAAAAGCATCTGAATGGGGTTTCAGGTTTCATCAAACTCCAGATTACTGAGGGAAGACAGTGGCCGGTTCGCTGCCTTTATAGAGTGGGTAGAGCGAAGTTAAGCCAGGGGTGGTTTGAATTCGCCCAAGATAACAACCTCAGGGAAGGTGATGTCTGTGTTTTTGAGCTGCTTAGAATGAGGGAAGTGGTGCTGAAAGTTACTATGTTTCGAGTCCTTGAAGAAGAGGTGGGATTGTTGAACCCTCCCATGCACCAAAGCCGAAGCATGAGCCCAACCGCCAAACTGTTGAACAATCCCTTGCAGCGAGACGTGAGCCCCATGAAAATAATTAGAAATTAG 1296 0.4298 MPRPCFHKLILPSTVQAGQLRVPDYFLRKFGGELSTIATLSVPDGSVWRICIKKADNKFWLHDGWKEFVQRYSIGVGCFLVFGYEGNSSFNVHIFNLAASEINYQLANRNSDERPYFSNQHIFDEMEDEDSIEFFDSTPSYLTPGAFNNKVMAGSADQLTPGKNYTPSPLQNLFNGSKLNSINWGDTISSKDANSQNNQLTRDKGVQFNAAEFKRSTEELKLRASNNEMQRVKKTARKRRKPDPDGEESSPHHEEEVEMRFRFYESASARKRTVTAEERERAVNAAKAYEPPNPFCRVVLRPSYLYRGCIMYLPSGFAEKHLNGVSGFIKLQITEGRQWPVRCLYRVGRAKLSQGWFEFAQDNNLREGDVCVFELLRMREVVLKVTMFRVLEEEVGLLNPPMHQSRSMSPTAKLLNNPLQRDVSPMKIIRN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2098 431 Gene3D - 1 98 IPR015300 -
Alju02g2098 431 CDD B3_DNA 294 389 IPR003340 GO:0003677
Alju02g2098 431 CDD B3_DNA 4 96 IPR003340 GO:0003677
Alju02g2098 431 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Alju02g2098 431 MobiDBLite consensus disorder prediction 239 257 - -
Alju02g2098 431 Pfam B3 DNA binding domain 8 96 IPR003340 GO:0003677
Alju02g2098 431 Pfam B3 DNA binding domain 299 389 IPR003340 GO:0003677
Alju02g2098 431 PANTHER B3 DOMAIN-CONTAINING 3 379 - -
Alju02g2098 431 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Alju02g2098 431 MobiDBLite consensus disorder prediction 219 257 - -
Alju02g2098 431 SUPERFAMILY DNA-binding pseudobarrel domain 289 389 IPR015300 -
Alju02g2098 431 Gene3D - 273 393 IPR015300 -
Alju02g2098 431 SMART B3_2 6 98 IPR003340 GO:0003677
Alju02g2098 431 SMART B3_2 296 391 IPR003340 GO:0003677
Alju02g2098 431 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2098 Alju-ChrAlju02 20354962 20358691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2098 1 396 B3 DNA Binding Superfamily AT3G18990 50.251 1.72e-129 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju02g2098 B3 3.8e-17 CL0405