LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju02g2094	ATGGCTAAGCCATACTCAAATAATAAAGCCTTAGGCTGCTTCATCTTTAGCTCCCTCTTCATATCTTCTCTCTCACATTTGCTTCCATCAATCCCAATCCCAGAGGATAGCGAGTTTTCATTAGGTTTCAATATTCAATTTGATGTCAACTTAACTTTTGAACATGATAGGCTTAAAAACGCCTATGTTGCTCTTCAGGCATGGAAAAGTGCCATATATTCTGATCCATTGAACACACTTGAAAATTGGGTTGGTTCTGATGTTTGTTCTTATAATGGTGTGTTCTGTGCTGAAGCTCTTGATGACCCTAAATTAACTGTTGTTGCTGGAATTGATCTCAACCATGCAGATATTGCTGGTCGTCTTGTTCCCGAGTTAGGCCTCTTAACAGACATGGCTCTGTTCCATATAAACTCTAATAGGTTTTGTGGGATTGTCCCAGACAGCTTTAAGAATCTCACTCTTATGTATGAGTTTGATATAAGCAACAATAGGTTTGTTGGTGCTTTCCCTTCTGTGGTCCTTACATGGCCAGACATAAAGTATTTGGATCTCAGGTTTAATGATTTTGAAGGACCTTTGCCTCCACAACTTTTTGAGAAAGATATTGATGCATTGTTTTTGAACAATAATCGTTTTGTTTCAACCATCCCAGAAACCCTTGGGAACTCCACGGCCTCTGTTGTGACATTTGCTAACAACAAATTCTTAGGTTGCATTCCAAAATCAATTGGGAACATGGTGAACTTGAATGAGATTGTTTTCTTAGGGAATGGTCTCGGAGGTTGTTTCCCACAAGAGATTGGATTGTTGGGAAATTTGACGGTTTTTGATGCCAGCCATAATGGGTTTGTTGGGACATTGCCAAACTTGTCAGGTTTGAAGAGTGTGGAGGTAATGGACATTGCACATAATAAGATTTCTGGGTATGTGTCGGACAGTATTTGCAAGCTACCAAGGTTGACCAAATTTTCATTCTCGGACAATTACTTTAATGGAGAAGCTCAATCTTGTGTGCCTTCTTCAAGAACAAATGTTGTTTTTTATGATAGTAATAATTGTTTGCCTCTGAGATCAAACCAAAAGACGAGCAAGCAATGTTTGCCAGTGGTGACTCGTCCTGTTGATTGTAGCAAGAGTTGTGGAAGCGGTGATGGCAACAACCATACCCCATCAACACCAAAAACACCGAAGGTAGAGCCCCCGGTTCATTCTTCTCCACCCACTGTTCAATCTCCTCCGCCACCAATCCACTCTCCACCCCCACCTGTGTTCTCTCCTCCGCCACCAGTTTACTCTCCACCGCCTCCAATCCACTCTCCACCTCCACCTCCACCTCCACCTGTGGTCTCTCCACCGCCTCCAGTCCATTCTCTACCTCCACCTGTGGTCTCTCTTCCGCCTCCAGTCCACTCTCCACCTCCACCTGTGTTCTCTCCTCCACCCCCTGTCCACTCTCCACCGCCTCCAGTCCACTCTCCACCTCCACCTGTGGTCTCTCCTCCGCCCCCTGTCTACTCTCCACCGCCTCCAGTCCACTCTTCACCTCCACCTGTAGTCTCTCCTCCGCCACCAGTTCACTCTCCACCGCCACCTATGTTCTCTCCACCCCCACCTGTGTTCTCTCCTCCGCCACCAGTGTTCTCTCCACCGCCTCCAATCCACTCTCCACCTCCACCTGTGGTCTCTCCATTGCCTCCAGTCCATTCTCTACCTCCACCTGTGGTCTCTCTTCCGCCTCCAGTCCACTCTCCACCTCCACCTGTGGTCTCTCCTCCACCCCCTGTCTACTCTCCACCGCCTCCAGTCCACTCTCCACCGCCACCTGTGGTTTCTCCTCCACCCCCACCGGTGTTCTCTCCTCCACCCCCAGTTCACTCTCCACCCCCACTTGTGTTCTCTCCGCCCCCTGTTCACTCTCCACCACCACCCATGTTCTCTCCTCCGCCACCAGTTCACTCCCCTCCACCTCCAGCCCAATCTACCCCACCTCCACCCGTGTTCTCTCCTCCGCCCTCAGTCCATGCTCCTCCACCTTCGCCCCCAGTCCACTCCCCACCTCCACATGTGTTCTCTCCCCCACCACCAACTAGTCCTCCTCCTCCACCTACTCCTGTATTGTCTCCACCGCCACCGATATGGGATGATGTCATCTTGCCCCCAACCTTCGGGGCCCAATATAGTTCACCACCTCCACCGACTATTGTTGGATATTAA	2217	0.4921	MAKPYSNNKALGCFIFSSLFISSLSHLLPSIPIPEDSEFSLGFNIQFDVNLTFEHDRLKNAYVALQAWKSAIYSDPLNTLENWVGSDVCSYNGVFCAEALDDPKLTVVAGIDLNHADIAGRLVPELGLLTDMALFHINSNRFCGIVPDSFKNLTLMYEFDISNNRFVGAFPSVVLTWPDIKYLDLRFNDFEGPLPPQLFEKDIDALFLNNNRFVSTIPETLGNSTASVVTFANNKFLGCIPKSIGNMVNLNEIVFLGNGLGGCFPQEIGLLGNLTVFDASHNGFVGTLPNLSGLKSVEVMDIAHNKISGYVSDSICKLPRLTKFSFSDNYFNGEAQSCVPSSRTNVVFYDSNNCLPLRSNQKTSKQCLPVVTRPVDCSKSCGSGDGNNHTPSTPKTPKVEPPVHSSPPTVQSPPPPIHSPPPPVFSPPPPVYSPPPPIHSPPPPPPPPVVSPPPPVHSLPPPVVSLPPPVHSPPPPVFSPPPPVHSPPPPVHSPPPPVVSPPPPVYSPPPPVHSSPPPVVSPPPPVHSPPPPMFSPPPPVFSPPPPVFSPPPPIHSPPPPVVSPLPPVHSLPPPVVSLPPPVHSPPPPVVSPPPPVYSPPPPVHSPPPPVVSPPPPPVFSPPPPVHSPPPLVFSPPPVHSPPPPMFSPPPPVHSPPPPAQSTPPPPVFSPPPSVHAPPPSPPVHSPPPHVFSPPPPTSPPPPPTPVLSPPPPIWDDVILPPTFGAQYSSPPPPTIVGY	738

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju02g2094	738	PRINTS	Proline rich extensin signature	416	432	-	-
	Alju02g2094	738	PRINTS	Proline rich extensin signature	433	450	-	-
	Alju02g2094	738	PRINTS	Proline rich extensin signature	390	411	-	-
	Alju02g2094	738	PRINTS	Proline rich extensin signature	455	480	-	-
	Alju02g2094	738	SUPERFAMILY	L domain-like	62	355	-	-
	Alju02g2094	738	PANTHER	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED	27	502	-	-
	Alju02g2094	738	MobiDBLite	consensus disorder prediction	379	535	-	-
	Alju02g2094	738	MobiDBLite	consensus disorder prediction	559	717	-	-
	Alju02g2094	738	Pfam	Leucine rich repeat N-terminal domain	62	96	IPR013210	-
	Alju02g2094	738	MobiDBLite	consensus disorder prediction	559	738	-	-
	Alju02g2094	738	Gene3D	Ribonuclease Inhibitor	60	357	IPR032675	-
	Alju02g2094	738	MobiDBLite	consensus disorder prediction	395	535	-	-
	Alju02g2094	738	FunFam	Pollen-specific leucine-rich repeat extensin-like protein 1	61	359	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju02g2094	Alju-ChrAlju02	20323519	20325735	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju02g2094	11	379	Trihelix Transcription Factor Family	AT1G49490	65.782	1.29e-180	536