Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2059 ATGGAAGATGACGACGAAGTCGTCTCGTGTTCTTCCGGTTCCGACGACGACGAGGTTTTTTCCGGTGAAAGTGAAGATACCGTCGATAAGGATGATCGGTCAGAGGTCGAAGTTTATTCTTTATCCGATGACGAGAGAAAATCGAAGAATATCGATGCTCTTGTGAGGGGCAACCTTGTCGTGAAGACACAATCGCTGCTTCCACGAGTTCTTTCTGTAACACAAGGAGCAGCCATTTGTAGAAAACCCTTTAGACCTCCCAGCTCCGATGGTTACAATAATGGAAATGAAGAGCTTACACGTCGCCTTTGTGCTCGAAAAAGGTTTGTCCCGTGGGGCTCTACCAGACCGGTATTGGTGGCAATTACCAATCGGTTAAATTCACCAATAAGCGTTGAAGAGGATGTTGCCGCAGAGGAAGTTTCTTTGCCACCTGAGATTGAACCTCTAGTGTTGTGGCAGCCCGAAGGCTTTGAGGAGGAGGGCCATAATTTGACTCCAATAACAGTGGACCCGTTGCTTGTTCGTTTCCTTAGACCACACCAGAGAGAAGGAGTTCAGTTTATGTTTGAATGTGTTTCAGGGCAACTTAGCACAGCAAATATTCACGGGTGCATCCTGGCAGATGATATGGGGCAATCTGCTTTTGATGCTACTTGCAGTTTGGGAAAGACTTTGCAGTCAATCACACTTTTGTATACACTTCTTTGTCAAGGGTTTGATGGAAAGCCAATGGTTAGAAAAGCCATCATTGTGACCCCTACCAGCCTTGTAAGTAATTGGGAAGCTGAAATTAAGAAGTGGGTTGGAGAAAGAGTTCGTCTTGTTGCAATGTGTGAAAGTACAAGAGATGATGTCATTTCTGGAATTGACAATTTTACAAGTCCCCTCAGCTCTCTACAGGTGCTTATAGTATCATATGAGACTTTCCGAATGCATTCATCAAAATTTGGCCATGGTGACTCTTGTGATCTACTCATATGTGATGAGGCTCACAGGCTGAAAAATGATCAGACAATTACAAACCGGGCATTGGCTGCTCTCTCATGCAAACGTAGAGTGTTGCTTTCAGGAACTCCTTTGCAGAATGACCTAGAGGAATTCTTTGCTATGGTTAACTTCACTAATCCTGGAATATTAGGTGACATTACACATTTTCGCCGGTACTTTGAGGGACCAATTATTTGTGGAAGAGAACCTACTGCCTCTTCAGATGAGAAGAAGCTAGGTGCTGACCGCTCTGCAGAGTTAAGTGCGAAAGTTAACCAGTTTATATTGAGAAGGACTAATGCATTGTTGTCAAATCACTTACCGCCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTAACGCAACTCCAGTCAGACCTATATAAATACTTTATACAATCCAAAAATGTTAAACGCGCAATTGTTGAAGACGTAAAGCAATCGAAGATTTTAGCCTACATAACAGTTCTTAAAAAGTTGTGCAACCATCCTAAGCTTATATATGATACTATCCGAAGTGGAAGTCCAGGAACTTCGGGTTTTGAGGACTGCATTCGGTTCTTCCCACCAGAGATGTTATCAGGAAGGTCTGGCTCATGGAATGGAGGGGATGGAGCTTGGATTGAGTTGTCAGGAAAAATGCATGTCTTAGCAAGATTACTTGCCCAGATACGGCAAAGGACCAATGACCGCATTGTCCTTGTCTCAAACTACACACAGACTCTGGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCGTTCTTGAGGCTTGATGGTGCAACTTCAATCAGTAAAAGGCAGAAGTTAGTAAACCGCTTCAATGACCAATCTAAGGAAGAATTCGCTTTTCTATTGAGTAGCAAGGCTGGTGGCTGTGGCCTCAATTTAATTGGAGGAAGTCGATTAGTCTTGTTCGATCCTGATTGGAATCCTGCAAATGATAAACAAGCTGCAGCAAGAGTTTGGAGGGATGGGCAGAAGAAAAGAGTGTACATTTATAGATTTTTGAGTGCGGGGACAATAGAGGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTACAAAAGGTCATTCAGCAGGAGCAAACAGATAACCTTGAGACACTGGGTAACTTTTCAACAGAGGTCCTTCGCGATCTGTTCTCGTTTCATGAAAGTGTCAAGTCAGAGATTCATGAAAGGATGCATTGCATTCGGTGCCAGACAAATGATGATGGGCCTCGGAGCGAAGATGGGAAATATGCAGCTCATTCAACTATAAGTAACGGTGAATCTGATGAGGAAACCTCTGATGATATAGGTGGATTTGCAAAACTTGCAGGCTGTATACACAAGTTAAAGAAATCAGAAAAGCAGGTAGGGACCCCCTTGGAAGAAGATTTAGGTAGCTGGGGCCATCATTTCTTTCCAACGACTGTACCGGACGCTATTCTTCAGGCTTCAGCCGGAGATGAGGTGACCTTTGTTTTTACAAACCAAGTAGATGGAAAGCTGACACCAATTGATTCAACCATCAGTTCAGAGATACAGCAAGATGAAAGCAAGGAACTGACCCAGCTAAAACGGAACGTCAAACAAAATCCCCTTTCTTTAGCTCAGAAGCCATCTTACTCCTTCAAGCCTTCAATGAGGCCACCATTGAGTTGTGTTAGAGCGAAGGAAAATATACCAACACAACCAGCTTTAAATTCCAAAAACTCCCTTGTGAATCAATTACCACAGAAAAGATCATGTCCCACTTATGTCGATATTGATGAATTAGAATAG 2763 0.4325 MEDDDEVVSCSSGSDDDEVFSGESEDTVDKDDRSEVEVYSLSDDERKSKNIDALVRGNLVVKTQSLLPRVLSVTQGAAICRKPFRPPSSDGYNNGNEELTRRLCARKRFVPWGSTRPVLVAITNRLNSPISVEEDVAAEEVSLPPEIEPLVLWQPEGFEEEGHNLTPITVDPLLVRFLRPHQREGVQFMFECVSGQLSTANIHGCILADDMGQSAFDATCSLGKTLQSITLLYTLLCQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGERVRLVAMCESTRDDVISGIDNFTSPLSSLQVLIVSYETFRMHSSKFGHGDSCDLLICDEAHRLKNDQTITNRALAALSCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGDITHFRRYFEGPIICGREPTASSDEKKLGADRSAELSAKVNQFILRRTNALLSNHLPPKIVEVVCCKLTQLQSDLYKYFIQSKNVKRAIVEDVKQSKILAYITVLKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWNGGDGAWIELSGKMHVLARLLAQIRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGATSISKRQKLVNRFNDQSKEEFAFLLSSKAGGCGLNLIGGSRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDNLETLGNFSTEVLRDLFSFHESVKSEIHERMHCIRCQTNDDGPRSEDGKYAAHSTISNGESDEETSDDIGGFAKLAGCIHKLKKSEKQVGTPLEEDLGSWGHHFFPTTVPDAILQASAGDEVTFVFTNQVDGKLTPIDSTISSEIQQDESKELTQLKRNVKQNPLSLAQKPSYSFKPSMRPPLSCVRAKENIPTQPALNSKNSLVNQLPQKRSCPTYVDIDELE 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2059 920 Pfam SNF2-related domain 181 496 IPR000330 GO:0005524|GO:0140658
Alju02g2059 920 Gene3D - 450 718 - -
Alju02g2059 920 SMART ultradead3 174 386 IPR014001 -
Alju02g2059 920 Gene3D - 428 736 IPR027417 -
Alju02g2059 920 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 222 378 IPR014001 -
Alju02g2059 920 CDD DEXHc_RAD54 178 428 - -
Alju02g2059 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 432 732 IPR027417 -
Alju02g2059 920 CDD SF2_C_SNF 539 667 - -
Alju02g2059 920 MobiDBLite consensus disorder prediction 735 762 - -
Alju02g2059 920 PANTHER SNF2/RAD54 FAMILY MEMBER 74 854 - -
Alju02g2059 920 FunFam DNA repair and recombination protein RAD54-like 534 705 - -
Alju02g2059 920 SMART helicmild6 572 656 IPR001650 -
Alju02g2059 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 428 IPR027417 -
Alju02g2059 920 FunFam DNA repair and recombination protein RAD54 149 427 - -
Alju02g2059 920 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 545 702 IPR001650 -
Alju02g2059 920 Gene3D - 154 427 IPR038718 -
Alju02g2059 920 MobiDBLite consensus disorder prediction 1 25 - -
Alju02g2059 920 MobiDBLite consensus disorder prediction 1 35 - -
Alju02g2059 920 FunFam Predicted protein 450 524 - -
Alju02g2059 920 Pfam Helicase conserved C-terminal domain 546 655 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2059 Alju-ChrAlju02 19911313 19918538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g2059 536 713 RAD5 or RAD16-like Gene Family AT5G43530 37.430 1.00e-24 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju02g2059 SNF2_N 1.9e-48 CL0023