Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g2019 ATGGCTTCAAGCTCTCTGAGCAAAAAGAAGGCATGTGATTCCTCATCATGGACACCTAAACAGAACAAGATGTTTGAGAAGGCTCTTGCAAAATACGACAAGGACACTCCTGATCGATGGCAGAATGTGGCTAAAGCGGTTGGTGGCAAATCAGCTGAGGAAGTGAAGACACACTATGAAATCCTCTTAGAGGATCTAAGACACATTGAGTCTGGTCATGTTCCCATCCCAAACTACAAATCCAGTACTGGTACCACTGCCAATAATGCTGATAAAGAAGACAGGCTTATGAAGTATCGTCAGCTGAATTGA 312 0.4359 MASSSLSKKKACDSSSWTPKQNKMFEKALAKYDKDTPDRWQNVAKAVGGKSAEEVKTHYEILLEDLRHIESGHVPIPNYKSSTGTTANNADKEDRLMKYRQLN 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g2019 103 MobiDBLite consensus disorder prediction 74 103 - -
Alju02g2019 103 FunFam Transcription factor SRM1 9 76 - -
Alju02g2019 103 Pfam Myb-like DNA-binding domain 15 59 IPR001005 -
Alju02g2019 103 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Alju02g2019 103 ProSiteProfiles SANT domain profile. 14 67 IPR017884 -
Alju02g2019 103 SMART sant 13 65 IPR001005 -
Alju02g2019 103 Gene3D - 9 76 - -
Alju02g2019 103 CDD SANT 16 63 IPR001005 -
Alju02g2019 103 ProSiteProfiles Myb-like domain profile. 9 63 IPR001005 -
Alju02g2019 103 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 93 IPR044636 GO:0003700
Alju02g2019 103 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g2019 Alju-ChrAlju02 19481986 19482510 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Alju02g2019 Myb_DNA-binding 4.9e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g2019 02 19481986 19482510 Alju02g2019 02 19481986 19482510 ECH
Alju02g2019 02 19481986 19482510 Alju12g0060 12 826005 826220 ECH
Alju02g2019 02 19481986 19482510 Alju09g2304 09 46140416 46141072 ECH