Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1966 ATGAAAGAAGACCCGGAGGCACCTAGCGGTGTTGCAACTTGCAAGAAGAAAGCATCTGTTCTGCAACGTCCACCTCTTCTCTGTTGTTACCCTCCAATGGCCAGGCCAAGAGCTCAAAGACGAACCCTTGATTCGTACACAGTCAAGCACATAAACAAAACCATTATGGCCGGCGACTGCGTGCTTATGCGGCCGTCCGACCCGTCAAATCCGTCGTATGTGGCTAGGATTGAGCGGATCGAAGCTGACTCGCGTGGCGCCAACGTGAAGGTCCACGTCCAGTGGTATTACCGGCCGGAGGAGTCAATTGGCGGGCGGAGACAGTTCCACGGTTCTAAGGAGGTTTTCCTTTCTGATCATTTTGATGTTCAGAGTGCCGATACTATAGAAGGCAAGTGTACGGTTCACAGTTTCAAGAGCTACACGAAACTTGATGCTGTTGGAAACGAGGATTTCTTCTGTCGCTTCGAATACAATTCCGCCACCGGTGCTTTCAATCCTGACAGAGTGGCTGTGTACTGCAAATGTGAGATGCCCTACAACCCTGACGACCTAATGGTCCAGTGTGAAAGTTGCAGTGATTGGTTTCATCCTGCTTGTATAGATATGACTGTGGAGGAAGCCAAAGGACTTGACCACTTCTTTTGTGAAAACTACACTCTAATACTAAGGTGA 675 0.4933 MKEDPEAPSGVATCKKKASVLQRPPLLCCYPPMARPRAQRRTLDSYTVKHINKTIMAGDCVLMRPSDPSNPSYVARIERIEADSRGANVKVHVQWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLDAVGNEDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPACIDMTVEEAKGLDHFFCENYTLILR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1966 224 Gene3D - 33 165 IPR043151 -
Alju02g1966 224 SUPERFAMILY FYVE/PHD zinc finger 163 217 IPR011011 -
Alju02g1966 224 Pfam PHD-finger 173 217 IPR019787 -
Alju02g1966 224 ProSiteProfiles BAH domain profile. 53 169 IPR001025 GO:0003682
Alju02g1966 224 SMART PHD_3 173 220 IPR001965 -
Alju02g1966 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 222 IPR013083 -
Alju02g1966 224 PANTHER OS08G0421900 PROTEIN 37 218 - -
Alju02g1966 224 SMART BAH_4 53 169 IPR001025 GO:0003682
Alju02g1966 224 Pfam BAH domain 54 168 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1966 Alju-ChrAlju02 18947494 18952785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1966 63 171 Core DNA Replication Machinery Family AT4G14700 27.523 4.72e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju02g1966 BAH 2.1e-22 No_clan