Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1946 ATGGAGTTTGCTGTAGCCGAAGCTTTGAAACCCAGTTTACGAACAGAACTTTCTTTTCAACAGAAAACGTTTTGCGAGGAAATTTTGTACCTGAACGGAAACAACGGCGTCTCCGGCGAGGATTTCTCGGTGGATGACCTTCTTGACTTGCCTCACGACGAGTTTCAGCATGTCCTTGTTGAAAAGGAAAACGATTTCGAAGACGACGACGAGAAAAAAGATGGTTCCTTTGTTTCTGACGATGTCAACTCCAACTCCGGCAGTGATTTCGGCACCGGAGATTCAGAGTCGGCTTTCGCAAGCGAGCTCGCCGTTCCGGCCGATGATTTAGCAGACCTAGAGTGGGTTTCTCACTTTGTAGACGATTCTCTTCTAGAGTTCTCGTATCCGGTTTACTCAGAGCAGTCGAAGGCGGAGAAGCACTCTGCGACGGAACTCAGACCGGACTTAACGACGGCGAATACTCTTCGTTTTCTGTCTAAAATTCCGGTGAAAACGAGAAGTACCAAATATAGAAAAGCCAACGCTCGTGTCTGGTCATCCAGCTCGATTCTCTTCGTTTCCCGGTCATCTCCTAAGTCATCCACCGATGTCGTCTTCGCCGGTGAAGCGCCGGCGATGAAGCTGAAAAAGAGGAAGCCGGTGGAAGGGGAAACGAGTGGGTCCCAGCTACAGCGTCGGTGCAGTCATTGTCATGTGCAAAAGACGCCACAGTGGAGAACCGGCCCACTAGGCGCCAAAACCCTGTGTAATGCGTGCGGGGTCCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTATAGACCAGCCTGTAGCCCAACTTTCTCGAGCGATTTACACTCAAATAGCCATCGCAAAGTGTTGGAGATTAGGAGGAGGAAGGAGACTGTTAGTCCGGAGGCCGGTTTGAGCCAAAAACAAATGGTCCAGAGCTTCTGA 936 0.5053 MEFAVAEALKPSLRTELSFQQKTFCEEILYLNGNNGVSGEDFSVDDLLDLPHDEFQHVLVEKENDFEDDDEKKDGSFVSDDVNSNSGSDFGTGDSESAFASELAVPADDLADLEWVSHFVDDSLLEFSYPVYSEQSKAEKHSATELRPDLTTANTLRFLSKIPVKTRSTKYRKANARVWSSSSILFVSRSSPKSSTDVVFAGEAPAMKLKKRKPVEGETSGSQLQRRCSHCHVQKTPQWRTGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSDLHSNSHRKVLEIRRRKETVSPEAGLSQKQMVQSF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1946 311 PIRSF Txn_fac_GATA_plant 13 310 IPR016679 GO:0003677|GO:0005634|GO:0045893
Alju02g1946 311 ProSitePatterns GATA-type zinc finger domain. 228 253 IPR000679 GO:0006355|GO:0043565
Alju02g1946 311 Gene3D - 219 296 IPR013088 GO:0006355|GO:0008270
Alju02g1946 311 ProSiteProfiles GATA-type zinc finger domain profile. 222 258 IPR000679 GO:0006355|GO:0043565
Alju02g1946 311 Pfam GATA zinc finger 228 261 IPR000679 GO:0006355|GO:0043565
Alju02g1946 311 MobiDBLite consensus disorder prediction 79 93 - -
Alju02g1946 311 CDD ZnF_GATA 227 275 IPR000679 GO:0006355|GO:0043565
Alju02g1946 311 MobiDBLite consensus disorder prediction 62 93 - -
Alju02g1946 311 FunFam GATA transcription factor 219 306 - -
Alju02g1946 311 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 285 - -
Alju02g1946 311 PANTHER GATA TRANSCRIPTION FACTOR 33 303 - -
Alju02g1946 311 SMART GATA_3 222 276 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1946 Alju-ChrAlju02 18748725 18749747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1946 8 310 C2C2-Gata Transcription Factor Family AT5G66320 41.691 3.73e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju02g1946 GATA 3.9e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g1946 02 18748725 18749747 Alju02g1946 02 18748725 18749747 ECH