Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1934 ATGGCCGAGTGGTCTAAGGCGTCAGACTCAAGTTTTGGTCCTCGTGTGAGGACATGGTCCAACGGAAGCATTCCATTTCCATATCTAGTTTCAGTCTTTTTAGCACCAAGCTTTCAGACCCATATGCTCCCGAGTCCCGAGATTCTGATGGCCGAGTCACCTCGTCCCGATATGGACGAGTCTGTAACTGTGACGAAGACCGTGCCAAGTTCCGAGGTGCCGGGAGAGGAGCAACCTTCGTCCAACTCGAATGGGTTAACTCATCAAACGCCGGAGCAACTCGTGGCCAGAGCCATAGCTCCTGTGAAGGTGGAGTTCCTTCGTCCTCCTCCTGTTAGAACTTCCTCCACAACCCAGGCTGAAGATGTTTCTGAAGACAAGGATAAGGCCTCTGTTCAATCCGGTGGATTGCTGAAGGAGAAGAAGTCGAAGCGCCAACTCAAGCGTGAACGCCGTCAGGAACAGAAGTCTGCTAAAAACATTTGTCCGGAAGTTGCAAAGACAGGAGATATCAGTTCATGTCCTTACAAAGACAAATGCCGCTTCAGCCATGACTTAGAAGCCTTCAAGGCTCAGAAACCAACTGATTTAGAGGGAGAATGCCCTTTTTTTAAAGCTGAAGGTTCATGCCCCTATGGTTTAGCATGTAGGTTTTCCAGCACGCATACAGAAGGCATGCCTTCTGGAAATCTCAATGGTCGGAGGAAAACTTCCGAAATAAATGGACTGAGTAAAGATGTGCAAAAGCTTTTATGGAAAAATAAGATGCGCTTTCCCAAGGCAGGTGCCAGTCTCAGAGCTCTTGGACTCTGGGAATCATCTAAGTTAAAGCGAAATGACTTAGAAGATAAGGAGGGTGGCAACATTGATTCAAATAATTGCTGCAATACTGATAATAACGGCTCTTGTGAAGTTACAAATGACTTGGGTTCTATCATAGAAAGCTCTCCTGAGGACACAAAAGTTGATGGTAATGATGGAAATTTAGATTCTGATTCACCTTGCCCTCAAAAGAGAAGAAAAACTGAAGAAAATTCTGGCCTTAATGCAGCAGAAAATGAAGGTATGTGTGTTACTGACCAAAACATTGAAAAAAGCTGCATACAAGCTGAACTTGATATAGTAACTGATGTCATACCCCCTGAAACTGATCAAAGCATGAAGTTACACCCACGAGAAAAGAAGCTTATTGATTTCAGAGATAAGTTGTATCTTGCGCCCTTGACCACTGTTGGGAATCTCCCATTCAGGAGGGTTTGCAAAGCATTAGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCATCAGAATGGGCATTGCTGAGACGTCATTCATCTGAAGATTTATTTGGCGTGCAAATATGTGGGGCATATCCAGACACTATTGCTCGAACTATAGAACTGATAGAGCAGGAATGTACAATAGATTTTATTGATATAAATATGGGTTGCCCAATAGATATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTCACGAAACCAATGCGGATGAAAAATGTTGTAGAGGTAGCTTCAGGCACAGTGGAGAAACCTATAACTGTCAAGGTACGGACAGCTTATTTTGAAGGGAAAAATCGTGTCAATTCTATTATTGCAGACATGGGTTCTTGGGGAGCTAATGCAGTAACAATTCATGGTAGATCACGTCAACAACGATACAGCAAGCTTGCTGACTGGGACTATGTCTACCAATGTGCCAGGAAGGCCCCTAATACTTTGCAAGTAGTAGGGAATGGAGATATTTTTTCATTTGTTGACTGGAACAACCACAAGGCTGAATGCTCTGAGCTTGCTACATGCATGATTGCTCGTGGAGCACTGATTAAGCCTTGGATATTGACAGAAATCAAGGAACAAAGGCACTGGGACATTAGTTCTGGGGAGCGATTAAATATTTTGAAAGATTTTGCACATTTTGGCCTTGAACACTGGGGTTCTGATACAAAAGGAGTGGAGACGACCAGGCGGTTTTTATTGGAATGGCTTAGCTACACATGTAGATATATACCTGTTGGCCTTTTAGATGTTATTCCACAAAGACTAAACTGGCGTCCTCCCTCTTACTACGGACGCGACGACCTTGAGACTCTAATGGCTTCAGACTCTGCAGCTGACTGGATACGAATATCAGAGATGTTACTTGGCAAGGTTCCAGACGGCTTTTCTTTTACGCCAAAGCATAAATCAAATGCTTATGATAGTGCTCAGAATGGCTGA 2265 0.4389 MAEWSKASDSSFGPRVRTWSNGSIPFPYLVSVFLAPSFQTHMLPSPEILMAESPRPDMDESVTVTKTVPSSEVPGEEQPSSNSNGLTHQTPEQLVARAIAPVKVEFLRPPPVRTSSTTQAEDVSEDKDKASVQSGGLLKEKKSKRQLKRERRQEQKSAKNICPEVAKTGDISSCPYKDKCRFSHDLEAFKAQKPTDLEGECPFFKAEGSCPYGLACRFSSTHTEGMPSGNLNGRRKTSEINGLSKDVQKLLWKNKMRFPKAGASLRALGLWESSKLKRNDLEDKEGGNIDSNNCCNTDNNGSCEVTNDLGSIIESSPEDTKVDGNDGNLDSDSPCPQKRRKTEENSGLNAAENEGMCVTDQNIEKSCIQAELDIVTDVIPPETDQSMKLHPREKKLIDFRDKLYLAPLTTVGNLPFRRVCKALGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTIARTIELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNVVEVASGTVEKPITVKVRTAYFEGKNRVNSIIADMGSWGANAVTIHGRSRQQRYSKLADWDYVYQCARKAPNTLQVVGNGDIFSFVDWNNHKAECSELATCMIARGALIKPWILTEIKEQRHWDISSGERLNILKDFAHFGLEHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPSYYGRDDLETLMASDSAADWIRISEMLLGKVPDGFSFTPKHKSNAYDSAQNG 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1934 754 SMART c3hfinal6 157 186 IPR000571 GO:0046872
Alju02g1934 754 SMART c3hfinal6 197 224 IPR000571 GO:0046872
Alju02g1934 754 CDD DUS_like_FMN 402 637 IPR035587 -
Alju02g1934 754 ProSitePatterns Uncharacterized protein family UPF0034 signature. 486 504 IPR018517 GO:0008033|GO:0017150|GO:0050660
Alju02g1934 754 Coils Coil 137 157 - -
Alju02g1934 754 MobiDBLite consensus disorder prediction 63 88 - -
Alju02g1934 754 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 398 640 - -
Alju02g1934 754 MobiDBLite consensus disorder prediction 120 143 - -
Alju02g1934 754 ProSiteProfiles Zinc finger C3H1-type profile. 156 187 IPR000571 GO:0046872
Alju02g1934 754 ProSiteProfiles Zinc finger C3H1-type profile. 200 225 IPR000571 GO:0046872
Alju02g1934 754 MobiDBLite consensus disorder prediction 333 347 - -
Alju02g1934 754 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 90 748 - -
Alju02g1934 754 MobiDBLite consensus disorder prediction 106 161 - -
Alju02g1934 754 MobiDBLite consensus disorder prediction 50 88 - -
Alju02g1934 754 MobiDBLite consensus disorder prediction 314 348 - -
Alju02g1934 754 Gene3D - 151 229 - -
Alju02g1934 754 Pfam Dihydrouridine synthase (Dus) 405 640 IPR035587 -
Alju02g1934 754 Gene3D Aldolase class I 398 640 IPR013785 -
Alju02g1934 754 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 200 219 IPR000571 GO:0046872
Alju02g1934 754 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 152 231 - -
Alju02g1934 754 SUPERFAMILY FMN-linked oxidoreductases 402 715 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju02g1934 Dus 1.2e-49 CL0036