Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju02g1923 | ATGGAAGTTAGCCTCACCTCCAATCACTATACTCTTAGCTTGATCTCACGTTCTCCTTCTGCCTTTTCTCTTTCGAGTCTCCGATCCATTCGTACGCAATTCCTCGGTTGTTCTCATAATCTCAGGCCTCCCGGATGTGTTCGCTCTAGAAATAATAAATGCAAGAAGTTGCGCCTTCTTCAGCTCCATTCTCCTCGCTTTTTCTTCAAAGCATCTTTGAGTTCTCACTCCGTCGTTGTCGTCATCACCTTAGTTACTTTATCTGCCGTTTCTCTGTTCTACTATAATTACATCAAGAGAAAGAAGAACTCCGAAGAGATAATGGGACACCCCAAATTTGCATTATCACAGCAAGGAGGTAATATTGGGAACCAGGCCATCGAAAGTCAGATTCTTTGCTTTCAGGAATTTCAAGGGGAGAACTTGCTAAAGGAAATTGGAATATTGGAGGATAAATCTGACAGAGAAAACCATGATTTTGAGGCCAAAGAGGCCCAACTAACATATTGCGCATCTCCTATGGTGCAAGAAGAGGCTGTTGTGACTGAGAAATTAGAGTCACCTTCTGATGTTCTAACCTCTAGCGTTAACACTGCTTCATCTTCAAACACTTCCAAGGTTGTAGATGAATCTCATTTGTCCGTGGAATTCCAATCAGGTTCTTTTGAGCCTCTATCTTTTGCTGCAGAGATGACTAAATTACAAGTGGAAGAAACAAGAGATAAAGCTCGCTCTGATTCTGAGTTGCCTATAATTACAAACAAACATGAGGATACTGCTTCTTTTGATCCTTTAAACAATGAATTCACAATAGTGAAAGATCATGCTAAAGAGAAAATTGAACTTGGTCACATCAGCAGCGATGTCCTAGCTGGTGAATCTGCTAGGCAAGAACTGTACATGTTTTATCAGGTCAACATGTCTTCAACAGGATCCATGTCACCACTGAATGGTTTAAAATCACCACCTTCTCATGCTTTTTTCATGAAGAAAAAAGAATTGAAATCCACAATGGCGAATAGTGCTTTAAAAGGACCAGAATCATTAAAAGAGGTTTCTCTAGAAATTTCAGAGAATGTTGAAGGAGTGGAACCAAGAGCCAGTTACAAAGAAGGCTATTCCCAGCAAAATGGAAGTCATTCCTTGAGTAAGCGTAACAGATCTCTGAGCCACAGGGGAAAAACTGATCTGGACCAGAAAAGTAACGAACTTCTTCCCCAGAATTCTGACTCAATCAGGGAGCATGTTGATAAGGAAAATCATCATTCTCAACATCTTACAACATATAATTCTTTGCTAAAAGATGGAAGGTTGCATGAATGTGTTGAATTGCTTAAAGACATGGAAATGAAGGGAATTTTAGACATGACTAAGGTTTATCATGCAAAGTTTTTTAACATCTGCAAGAGACAAAAGGCTGTTAGAGAAGCTTTTGATTACATTAAGCTTATTCCAAATCCAAAATTGAGCACATTTAATATGCTCATGTCCGTGTGTTCAAGCTCTCAAAATTCAGAAGGGGCTTTCCAAGTTCTGCGGCTTGTTCAGGGGGCTGGATTCAAACCTGATTGCAAACTTTATACCACTTTGATATCAACATGTGCCAAGAGTGGTAAAGTTGATCAGATGTTTGAGGTATTTCACAATATGGTTAATTCTGGAATTGAACCTAACGTTCATACCTATGGGGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCATTTGGTGCTTATGGGATACTGAGGTCTAAGAAATTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCATGTGCTCGGTCAGGAGCAGTGGAGCGTGCTTTTGATGTTTTAGCAGAAATGGCTGCAGAATTGCAACCTATTGAACCAGATCACATAACTATCGGTGCATTAATGAAGGCATGTGCAAATGTTGGTCAGGTTGAACGAGCACGAGAAGTGTACAAGTGGTTAGACCAATATGGCATAAAGGGAACTCCAGAGGTCTACACTATTGCCATCAATGCTTGCAGCCAAACTGGAGATTGGGAATTTGCATGTGATGTATACAGTGACATGATTGGGAAAGGGGTTTTCCCGGATGAGATGTTTCTAAGTGCACTAATAGATTTTGCTGGACATGCTGGAAAGCTAGATGCTGCCTTTGAGTTCCTACAGGAAGCTCGTAACCAAGGAATACATATTGGAAAAGTGTCATACAGCTCTTTGATGGGAGCCTGTAGCAATACTGGAAATTGGGAGAAAGCGTTGGAGCTATATGAGGATCTTAAGTCACGTAAATTGGTGCATAGTGTTTCAACAGTGAATGCTTTGATCACTGCTCTGTGTAATGGGGATAAATTTCACAAGGCTATGGAGGTTTTGTTTGAAATGGAAGGATTGGGCCTGTGCCCAAACAGCATCACATACTCAATACTTATAGTTGCAAGTGAGAAAAAGGACGATCTGGAAGCAGCTCAAATGCTCCTATCTCAAGCCAAAATGGACGGTGTTCCCCCTAATCTTGTCATGTGTAGTTGTATAATCGGGATGTGCTTGAGGAGATATGAGAAGGATTGCAATGTTGGTGAGCTATCTTTTGACTCAAGGCAGCCACATTTTAATAATAAATGGACATCACTGGCCTTAATGGTGTATCGTAAGATGATTAGAGATGGTACAGTGCCTACTAGTGAAATTCTGTCACAAATTTTTGGATGCCTGCAACTCCCATATGATACCTCTTTGAAAAATAATCTTATTGAGAGCCTAGGAGTAAGTGCTGAAACTTCAAAACACTCAAACCTCTGTTCATTGATTGATGGATTTGGTGAATATGATCCTCGTGCTTTTTCGCTACTTGAGGAAGCTGCTTCTCTTGGAATTGTTCCATTCGTATCTTTTAAAGTGAATCCTATTGTTGTGGATTTAAAGGAATTGCACAATTTTACCGCTGAGGTATACCTCCTAACTGTTTTGAAGGGTCTCAAGCATCGGCTTGCAGCAGGCACAAGGTTACCCCACTTAATCTTCTTATTGCCTGTAGATAAAACAAACGTTGCAACTTCCAAGGGGGAGAAACTTATTAACGTTTCAGGAAGGGTTGGCCAGGCAGTTACAGCACTGTTGAGAAGGCTGAGAATACCATACCAGGGCAGTGAATCATTTGGAAAGATCAGAATTAATGGAGCAACTTTGAGAAGATGGCTTCAGCCAAAACTTGCATCTCCTTTCAGTGGAAAGCCAGGTGACTTGGGCTTGTCACAGTCACGACTTGGCAAAGGTATCAGTCTTCAACAGCGAATCATTCGATCCGGCAATCTGTCCTTGGATTAA | 3333 | 0.4095 | MEVSLTSNHYTLSLISRSPSAFSLSSLRSIRTQFLGCSHNLRPPGCVRSRNNKCKKLRLLQLHSPRFFFKASLSSHSVVVVITLVTLSAVSLFYYNYIKRKKNSEEIMGHPKFALSQQGGNIGNQAIESQILCFQEFQGENLLKEIGILEDKSDRENHDFEAKEAQLTYCASPMVQEEAVVTEKLESPSDVLTSSVNTASSSNTSKVVDESHLSVEFQSGSFEPLSFAAEMTKLQVEETRDKARSDSELPIITNKHEDTASFDPLNNEFTIVKDHAKEKIELGHISSDVLAGESARQELYMFYQVNMSSTGSMSPLNGLKSPPSHAFFMKKKELKSTMANSALKGPESLKEVSLEISENVEGVEPRASYKEGYSQQNGSHSLSKRNRSLSHRGKTDLDQKSNELLPQNSDSIREHVDKENHHSQHLTTYNSLLKDGRLHECVELLKDMEMKGILDMTKVYHAKFFNICKRQKAVREAFDYIKLIPNPKLSTFNMLMSVCSSSQNSEGAFQVLRLVQGAGFKPDCKLYTTLISTCAKSGKVDQMFEVFHNMVNSGIEPNVHTYGALIDGCARAGQVAKAFGAYGILRSKKLKPDRVVFNALIAACARSGAVERAFDVLAEMAAELQPIEPDHITIGALMKACANVGQVERAREVYKWLDQYGIKGTPEVYTIAINACSQTGDWEFACDVYSDMIGKGVFPDEMFLSALIDFAGHAGKLDAAFEFLQEARNQGIHIGKVSYSSLMGACSNTGNWEKALELYEDLKSRKLVHSVSTVNALITALCNGDKFHKAMEVLFEMEGLGLCPNSITYSILIVASEKKDDLEAAQMLLSQAKMDGVPPNLVMCSCIIGMCLRRYEKDCNVGELSFDSRQPHFNNKWTSLALMVYRKMIRDGTVPTSEILSQIFGCLQLPYDTSLKNNLIESLGVSAETSKHSNLCSLIDGFGEYDPRAFSLLEEAASLGIVPFVSFKVNPIVVDLKELHNFTAEVYLLTVLKGLKHRLAAGTRLPHLIFLLPVDKTNVATSKGEKLINVSGRVGQAVTALLRRLRIPYQGSESFGKIRINGATLRRWLQPKLASPFSGKPGDLGLSQSRLGKGISLQQRIIRSGNLSLD | 1110 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju02g1923 | 1110 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 770 | 804 | IPR002885 | - | |
| Alju02g1923 | 1110 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC | 20 | 1109 | - | - | |
| Alju02g1923 | 1110 | Gene3D | Tetratricopeptide repeat domain | 625 | 736 | IPR011990 | GO:0005515 | |
| Alju02g1923 | 1110 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 593 | 623 | IPR002885 | - | |
| Alju02g1923 | 1110 | FunFam | Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 | 623 | 714 | - | - | |
| Alju02g1923 | 1110 | Pfam | PPR repeat family | 592 | 643 | IPR002885 | - | |
| Alju02g1923 | 1110 | Pfam | PPR repeat family | 770 | 813 | IPR002885 | - | |
| Alju02g1923 | 1110 | Pfam | PPR repeat family | 523 | 571 | IPR002885 | - | |
| Alju02g1923 | 1110 | NCBIfam | pentatricopeptide repeat | 773 | 805 | IPR002885 | - | |
| Alju02g1923 | 1110 | NCBIfam | pentatricopeptide repeat | 737 | 768 | IPR002885 | - | |
| Alju02g1923 | 1110 | NCBIfam | pentatricopeptide repeat | 491 | 524 | IPR002885 | - | |
| Alju02g1923 | 1110 | NCBIfam | pentatricopeptide repeat | 668 | 701 | IPR002885 | - | |
| Alju02g1923 | 1110 | NCBIfam | pentatricopeptide repeat | 560 | 593 | IPR002885 | - | |
| Alju02g1923 | 1110 | NCBIfam | pentatricopeptide repeat | 526 | 559 | IPR002885 | - | |
| Alju02g1923 | 1110 | SUPERFAMILY | ARM repeat | 639 | 795 | IPR016024 | - | |
| Alju02g1923 | 1110 | Gene3D | Tetratricopeptide repeat domain | 418 | 624 | IPR011990 | GO:0005515 | |
| Alju02g1923 | 1110 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 488 | 522 | IPR002885 | - | |
| Alju02g1923 | 1110 | Pfam | PPR repeat | 737 | 766 | IPR002885 | - | |
| Alju02g1923 | 1110 | Pfam | PPR repeat | 430 | 453 | IPR002885 | - | |
| Alju02g1923 | 1110 | Pfam | PPR repeat | 668 | 697 | IPR002885 | - | |
| Alju02g1923 | 1110 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 735 | 769 | IPR002885 | - | |
| Alju02g1923 | 1110 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 665 | 699 | IPR002885 | - | |
| Alju02g1923 | 1110 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 805 | 839 | IPR002885 | - | |
| Alju02g1923 | 1110 | FunFam | Pentatricopeptide repeat-containing protein MRL1 chloroplastic | 715 | 862 | - | - | |
| Alju02g1923 | 1110 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 630 | 664 | IPR002885 | - | |
| Alju02g1923 | 1110 | FunFam | Pentatricopeptide repeat-containing protein MRL1, chloroplastic | 437 | 568 | - | - | |
| Alju02g1923 | 1110 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 523 | 557 | IPR002885 | - | |
| Alju02g1923 | 1110 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 558 | 592 | IPR002885 | - | |
| Alju02g1923 | 1110 | MobiDBLite | consensus disorder prediction | 363 | 407 | - | - | |
| Alju02g1923 | 1110 | MobiDBLite | consensus disorder prediction | 370 | 384 | - | - | |
| Alju02g1923 | 1110 | Gene3D | Tetratricopeptide repeat domain | 737 | 863 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju02g1923 | 436 | 854 | Glycosyltransferase | AT1G05670 | 24.824 | 1.47e-29 | 124 |