Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1897 ATGTCGAGCATCGCCAATGACATCCTGGCGAGCCCGATACAGATGGCGGACCAGGTGATCAAGCTGGCGGACGAAGCCCAAGCATTCAAGTTAGAATGTTTGGAGCTCAAGGCCAAAACAGAGAAACTCGTGGCCTTGCTCCGGCAAGCCGCCAGGGCCAGCAATGACCTCTACGAGAGGCCAACACGGCGAATCATCGATGACGTCGAACAAGTCCTCGAGAAGGCTCTCCAACTCATAGACAAATGCTGCGGAAACGGCCTCATGAAACGACTCTTCACCATCATAACCCCGGCGGCGTTTCGCAAGACGTCCACGCAGCTCGATAATTCCCTCGGCGACGTACAATGGCTCCTCCGTGTATCTGTCTCCGCCGACCAACGTGACGACGATTATCTGGGCGGTTTACCCCCAATCGCCTCCAACGAGCCCATCCTGTGCCTAATTTGGGAGCAGATAGCCATATTGCTCACAGGCTCTTCCATGGAAGATCGCTCTGACGCTGCCGCTTCCTTGGTCTCCCTGGCTCGAGACAACGACAGGTACAACAAATTGATTATTGAGGAGGGTGGAGTTCCGCCACTATTGAAGTTGCTGAAGGAAGGGCATGTAGAGGGTCAGGAAAGTGCAGCGAGAGCGATTGGGTTACTTGGGAATGACCCAGAAAGCGTGGAACACATTGTGAATGCTGGGGTTTGCACAGTGTTTGCCAAAGTCCTCAAAGAAGGTGACATGAAGGTTCAGGCTATGGTGGCTTGGGCTATCTCCGAATTAGCATATCACCACCCAAAGTGTCAGGATCACTTTGCTCAGACAAATTGCATACGCCTGCTGGTAAGGCATCTTGCCTTTGAGACAATCCAGGAACACAGTAAGTACGCCATTACCAGTAAACAAAACATGTCGTCCATCCATTCCATCGTGATGGCCAGTAACGCTCAGAACCAGGATCATCAAGACAAGAAGACTGTGATGATGCATGAAGGTAACTATCATTATGTTCCTCGTCCTACGGGGAACCAATCATCCAGCCAAATGAGTAATGTTGTTACCAACACAATGGCCGTGAAACAAGGCCACGCCCACGGCGGCGGCAATAACTCCTCGAAGCATGTTTCGATCGCGGGGACGAGTCTGAAGGGGAGGGAGGCTGTGGATCCAGTTACAAAGGCCCAAATGAAGGCCATGGCAGCGAAAGCGCTGTGGCAACTCTCGAGGGGAAACGTTACTGTGTGTCACAGCATCACAGAATCAAAGGCTCTGTTATGTTTTGCTGTTCTGTTGGAGAAGGGACTTGATGATGTCAAATCCTTTTCAGCTTTTGCTTTAATGGAGATCACAGCAGTGGCAGAGCAACACTCAGAGTTGAGACGCTCTGCTTTCAAACCCAATTCCCCTGCTGCAAAAGCCGTGGTGGACCAGTTTGTCAGGATCATTTCAAAAATGGAATTTGATCTTCTCATACCTTGCATCAAATCAATAGGTAATTTGGCAAGGACTTTTAGAGCAACAGAAACAAGAATTATACCACCATTGGTGGCTCTGCTTGAAGATGGAGTAGACGAAGAAATTAGATTGGAATCCACAATTGCACTTACTAAGTTTGCTTGTCCTGATAACTTTCTGCACCAGACTCACTGCTCAGCCATAATTGAAGCAGGAGGAGTACCTCACATAATCAACATTCTTTACTTTGAGGGGCTTGCCAAAAAGATTCCTGCGGCCCAGCTTCTGTGTTATGTGGTAATACATGTACCCAAAAGTGAGACGCTTACCCAAGATGGTGAAGTTCTCAGAGCTCTGGAATGGAGTATGGTGCCTGACTACCAGCTTATGCCAATTGTTGGAGAGCTTTTAGAGGAAGCCAAGGGTATATTGACACTGTATCAAACAAGAGATGCTACAAGAGGATTCCACAGTTATTGA 1926 0.4891 MSSIANDILASPIQMADQVIKLADEAQAFKLECLELKAKTEKLVALLRQAARASNDLYERPTRRIIDDVEQVLEKALQLIDKCCGNGLMKRLFTIITPAAFRKTSTQLDNSLGDVQWLLRVSVSADQRDDDYLGGLPPIASNEPILCLIWEQIAILLTGSSMEDRSDAAASLVSLARDNDRYNKLIIEEGGVPPLLKLLKEGHVEGQESAARAIGLLGNDPESVEHIVNAGVCTVFAKVLKEGDMKVQAMVAWAISELAYHHPKCQDHFAQTNCIRLLVRHLAFETIQEHSKYAITSKQNMSSIHSIVMASNAQNQDHQDKKTVMMHEGNYHYVPRPTGNQSSSQMSNVVTNTMAVKQGHAHGGGNNSSKHVSIAGTSLKGREAVDPVTKAQMKAMAAKALWQLSRGNVTVCHSITESKALLCFAVLLEKGLDDVKSFSAFALMEITAVAEQHSELRRSAFKPNSPAAKAVVDQFVRIISKMEFDLLIPCIKSIGNLARTFRATETRIIPPLVALLEDGVDEEIRLESTIALTKFACPDNFLHQTHCSAIIEAGGVPHIINILYFEGLAKKIPAAQLLCYVVIHVPKSETLTQDGEVLRALEWSMVPDYQLMPIVGELLEEAKGILTLYQTRDATRGFHSY 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1897 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 190 232 IPR000225 GO:0005515
Alju02g1897 641 Gene3D - 377 619 IPR011989 -
Alju02g1897 641 SMART arm_5 220 260 IPR000225 GO:0005515
Alju02g1897 641 SMART arm_5 178 219 IPR000225 GO:0005515
Alju02g1897 641 SMART arm_5 543 583 IPR000225 GO:0005515
Alju02g1897 641 SMART arm_5 496 537 IPR000225 GO:0005515
Alju02g1897 641 CDD MLKL_NTD 13 93 - -
Alju02g1897 641 Gene3D - 5 121 IPR036537 GO:0007166
Alju02g1897 641 Pfam Armadillo/beta-catenin-like repeat 185 215 IPR000225 GO:0005515
Alju02g1897 641 Gene3D - 151 327 IPR011989 -
Alju02g1897 641 FunFam Armadillo repeat only 2 151 322 - -
Alju02g1897 641 Coils Coil 36 56 - -
Alju02g1897 641 PANTHER ARMADILLO REPEAT ONLY 4 1 632 - -
Alju02g1897 641 SUPERFAMILY ARM repeat 151 599 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1897 Alju-ChrAlju02 18221852 18223916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1897 153 279 U-box Gene Family AT2G28830 33.582 3.58e-06 48.1