Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1887 ATGGGAAGGTCCCCTTGTTGTGAGAAAGCCCACACCAACAAAGGTGCTTGGACTAAGGAGGAGGACGATCGCCTCATCGCTTACATCCGCGCCCACGGCGAGGGATGCTGGCGCTCCCTCCCCAAGGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAACGCGGCAACTTCACCGAAGAAGAGGACGAGCTCATCATCAAACTCCACAGCCTTCTCGGCAACAAGTGGTCTCTAATTGCCGGAAGATTGCCGGGAAGAACAGACAATGAGATAAAGAACTACTGGAACACCCACATCAGAAGGAAGCTTTTAAACAGAGGAATCGACCCTTCCACTCACCGTCCTCTGAATGACTCCTCCGTCAATTCTGCTCAGAACAATCAAGAAGCCACCGCTACTATCTCTTTCGCCTCCCATGTGAAACAAGAGACCAATAATAGTAATGACAACAAGGCAAACGTGTTCGTTGAGCTTCACAGAGATTCAAAACGGGGCGTCGCAGGAGAACGATGCCCTGACCTGAACCTCGAGCTCACCATTAGTCCTCCTCATCAGAACCAGGAAACAGAGGATCAAGTTCAGCCCATCCTCAAGAGTGGTGGAGGAGGACGAAGCCTCTGTTTTGCTTGCAGTTTGGGGTTGCAGAATAGCAAGGATTGTAGCTGTGGAATTGTTGGCACCATTAATGGCGGCACAAGCGGGAGTGGTGGTAGCACTGGTGGGTATGATTTCTTGGGGTTGAAAAGCTCTGTTTTGGATTACAGAAGCTTGGAGATGAAATGA 822 0.5243 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPSTHRPLNDSSVNSAQNNQEATATISFASHVKQETNNSNDNKANVFVELHRDSKRGVAGERCPDLNLELTISPPHQNQETEDQVQPILKSGGGGRSLCFACSLGLQNSKDCSCGIVGTINGGTSGSGGSTGGYDFLGLKSSVLDYRSLEMK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1887 273 CDD SANT 69 112 IPR001005 -
Alju02g1887 273 SMART sant 66 114 IPR001005 -
Alju02g1887 273 SMART sant 13 63 IPR001005 -
Alju02g1887 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju02g1887 273 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Alju02g1887 273 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Alju02g1887 273 CDD SANT 16 61 IPR001005 -
Alju02g1887 273 FunFam Myb transcription factor 68 137 - -
Alju02g1887 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Alju02g1887 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju02g1887 273 Gene3D - 14 66 - -
Alju02g1887 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju02g1887 273 FunFam MYB-related transcription factor 13 66 - -
Alju02g1887 273 MobiDBLite consensus disorder prediction 125 142 - -
Alju02g1887 273 Gene3D - 69 166 - -
Alju02g1887 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 179 - -
Alju02g1887 273 MobiDBLite consensus disorder prediction 120 142 - -
Alju02g1887 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1887 Alju-ChrAlju02 18123937 18124900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1887 1 273 MYB Transcription Factor Family AT4G38620 59.862 7.23e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju02g1887 Myb_DNA-binding 3.9e-14 CL0123