Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1885 ATGGGTTTCTTCAGCACTTTATTCGGAGTTTTTGGATTCGGAATTGGGATTTCAGTTGGTTTTGTTATTGGATATTTTCTCTTTATTTACGTTCAACCCAGCGATGTCAAGGATCCTGAGATTAGTCCATTGGCCAAGCAAGATGAAGACACTTTGCAACAAATTATTCATGAGATTCCAATTTGGCTGAAAAATCCAGACTTTGATCGGGTTGATTGGTTAAACAAGTTTCTTGAATACATGTGGCCCTCCCTTGACAAGGCAATTTGCAAGACTGTAAAGGGCATTGCAACACCCATAATAGATGAGCAGATAAAAAATTATAAAATAGACTCAGTTGAGTTTGAAAGCCTAACACTTGGGACCTTACCTCCAACTTTTCAAGGGATGAAAGTCTTTGTGACTGATGAGAAGGACCTGATGATGGAGACTTGTTTAAAATGGGCTGCAAATCCTAATATCATTGTTGCTGTTAAGGCATTTGGGTTGAAAGCAACTGTTCAGGTGGTAGACTTGCAAGTTTTTCTTTCACCACGGATTACATTGAAACCTTTGGTTCCAACATTTCCTTGCTTTTGCAACATTTTTGTGTCTCTTATGGAGAAGCCACATGTCGACTTTGGGTTAAAACTTGTAGGGGCTGATCTCATGTCCATTCCTGGACTCTACAGGTTTGTTCAGGAGTTCATCAAAGATCAAGTTGCGAATCTCTACCTGTGGCCAAAAGCCTTGGAGGTCCAAGTTTTAGATCCAATAAAAGCAATGAAGAGGCCTGTGGGAATGCTAAGTGTAAAGGTTCTGAGAGCCATGAAACTTAAAAAGAAAGATTTACTTGGTGCCTCTGACCCTTATGTAAAACTAAAGCTTTCTGATGAAAGGATGCAATCAAAGACTTCAGTGAAACACAAATGCTTGAATCCAGAATGGAATGAAGAATTTAATCTTCTTGTTAAAGATCCTGAGAACCAGGTTCTAACTCTTAAAGTTTATGACTGGGATCAGGTTGGGAAGCATGAAAGGATGGGTGTAAATGTAGTCCCTTTAAAAGAAGTTCCCCCTCAAGAGGCTAAAGTTTATACTCTTGATCTCTTGAAAAACATGGATCCCTACGAGGGCGATAATGATAAGTCCCGCGGTCAGATTGTTGTAGAAGTAACATATAAGCCATTCAAAGAGGAGGACTTACTCAAGGACAACGTGGCTCACATAATACAGAATGTTCCTGAAGGCACTCCTCCTGGGGGAGGCCTGCTTGTGGTTATAGTCCACGAAGCTCAAGATGTTGAAGGAAAGTATCACACTAATCCTCAAGCTCGAGTTCTTTTCAAAGGGGAGCAGAGAAGGACTAAGCATATAAAAAAGAACAGAGATCCAAGATGGGCTGATGAGTTCCAATTTGTAGCAGAGGAACCTCCCACTAAAGAGAAAATACACGTGGAGGTTGTTAGCACCTCGTCCCGCAACCTGTTGCATCCCAAGGAATATCTGGGATATGTTGAGGTCGGTCTGGCGGATGTTGTGACTAACAAGAGGATTAATGAAAAGTATCACCTTATAGATTCAAAGAATGGTCGCATCCAAATAGAGTTGCAGTGGATACCTTCGCCAGCTTGA 1614 0.4108 MGFFSTLFGVFGFGIGISVGFVIGYFLFIYVQPSDVKDPEISPLAKQDEDTLQQIIHEIPIWLKNPDFDRVDWLNKFLEYMWPSLDKAICKTVKGIATPIIDEQIKNYKIDSVEFESLTLGTLPPTFQGMKVFVTDEKDLMMETCLKWAANPNIIVAVKAFGLKATVQVVDLQVFLSPRITLKPLVPTFPCFCNIFVSLMEKPHVDFGLKLVGADLMSIPGLYRFVQEFIKDQVANLYLWPKALEVQVLDPIKAMKRPVGMLSVKVLRAMKLKKKDLLGASDPYVKLKLSDERMQSKTSVKHKCLNPEWNEEFNLLVKDPENQVLTLKVYDWDQVGKHERMGVNVVPLKEVPPQEAKVYTLDLLKNMDPYEGDNDKSRGQIVVEVTYKPFKEEDLLKDNVAHIIQNVPEGTPPGGGLLVVIVHEAQDVEGKYHTNPQARVLFKGEQRRTKHIKKNRDPRWADEFQFVAEEPPTKEKIHVEVVSTSSRNLLHPKEYLGYVEVGLADVVTNKRINEKYHLIDSKNGRIQIELQWIPSPA 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1885 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 392 IPR035892 -
Alju02g1885 537 CDD C2 262 354 - -
Alju02g1885 537 Pfam C2 domain 417 518 IPR000008 -
Alju02g1885 537 Pfam C2 domain 261 355 IPR000008 -
Alju02g1885 537 ProSiteProfiles C2 domain profile. 240 361 IPR000008 -
Alju02g1885 537 ProSiteProfiles C2 domain profile. 399 516 IPR000008 -
Alju02g1885 537 SMART C2_3c 417 515 IPR000008 -
Alju02g1885 537 SMART C2_3c 261 360 IPR000008 -
Alju02g1885 537 CDD SMP_SYT 60 248 - -
Alju02g1885 537 Gene3D C2 domain 246 389 IPR035892 -
Alju02g1885 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 413 534 IPR035892 -
Alju02g1885 537 FunFam Extended synaptotagmin-2 417 534 - -
Alju02g1885 537 Gene3D C2 domain 417 534 IPR035892 -
Alju02g1885 537 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 532 IPR045050 GO:0008289
Alju02g1885 537 PRINTS C2 domain signature 303 316 IPR000008 -
Alju02g1885 537 PRINTS C2 domain signature 325 333 IPR000008 -
Alju02g1885 537 PRINTS C2 domain signature 277 289 IPR000008 -
Alju02g1885 537 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Alju02g1885 537 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
Alju02g1885 537 FunFam Synaptotagmin-2 isoform A 255 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1885 Alju-ChrAlju02 18106886 18112065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1885 258 514 Lipid Metabolism Gene Families AT3G61300 27.239 3.28e-12 67.4