Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1867 ATGAACACCGTCGTGCAAAACCTATCTGAGAAACTGAGGCCCCTTGTGGGTTTAAATGCCTGGGGCTACTGTGTTCACTGGAAATTAAGCAAAGACCGAAGGTCACTTTTCTGGGAGGCATGCTCTTGTGCTGGCACTGAAGGTCGCCAAAATGGTGGAGACAAACTTCTTTTCCCTGTTTCTTCAGTTGCTCCATGTAGGGATACCATGTTTCATCACCCCAGAACAGAGTCCTGTGCTTTGCTTTCTCAACTTCCCGTTTTCATAACCTTAGATTCTGGAACAGTTGGGACTCAAGTTTTGATTCCAGTGCCAGGTGGGCTAGTTGAGCTATTTGCAACAAAGCAAGTGCTGGAAGATCATCAGGTGATCGATTTCGTCGCATCCTGCTGCAATCTAGCAGTGGAGAGGACTGAATCGAAGAACTTTGAAGCAGAGATCAAGAAGAGGGAGAGGCTCATTAAGAACTTGTTAAGTCTACGGTCTTTAGTTCCTAGAATTTCTGGGCGAGGCGCAGCATCAATTATTGGGGACACAATTGAGTACGTAAAGGATTTGCAGAAGCAAGTGAAGCAGCTGCAAGAGGAGTTCTTGCAGCTGGAGAAAATTTCAGAAGTGGATGAACAAGAAGCACCAGATAATGTTGTTGGGGATGAAATGGGAACAAAAGCCGATCAAATAAAGACTCGAAAACAGGAACTTGATGTTACACAGAATAAACAGACACAACAGAAGGAGGGGCAAGTGGAAGTGGAAATGATAGAAGGGAATGAGTTGTATGTGAAGGTGTTGTGTGAACACAGACCTGGTGGATTCGTGAAACTGATGGAGGCATTCCACTCTCTTGGCCTCCACGTCATCTGCGCCAAAGTTGTCACTAGCCACCAAGGCCTTGTTTCCAATGTCTTCAAAGTGCAGAGAAAGGAGATCAATGAAATAGTGAAAGCTGAAGAGGTAAGGGAGTCACTAGTGGAACTTATGAGGAAGCCGGATAGAGGGAGGAATCACAAGATGAAGCTAGCATTCCCAACAGCTCCGATTACTCCTGTTGCAGCTGACATGAACATCATAACGCAAAGCCTGTCCGAGAGACTGAGGCCCCTTGTGGGGTTGAATGGCTGGGACTACTGTGTTCACTGGAAACTAAGCCAAGACCAAAGGTTTCTTGAATGGCTGGGATGCTCTTGTGCTGGGACTGAAGGTAGCCAAAATGGTGGAGAAGAACTTCTTTTCCCTGTTTCTTCAGCTGCTCCATGCAGAGATACAATGTTTCCTCATCCCAGTACAAAGTCCTGCGATTTACTATCCCAACTTCCCACTTCGATAACCTTAGATTCTGGGATTCATGCAGAGACACTATTATCCAATCAGCCCAACTGGTTGAACTATTCCAATAGCTTAGACCCAAACACTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTCCTGTGCCTGGGGGACTAATTGAGCTGTTTGTGACAAAGCAAGTGCAGGAAGATCAACAGGTGGTCGATTTTGTCACAGCCCACAGTAATATAAATATGAGCTTCGACATTGACGTTAATTCAATCAGTAATATGCAACCAAATATGAATCCACTTTTAGGGGATGAGAATGATGGGAATACAATAGCATCAGAGACTTCAAGTCTTCCCCCACATGATCAATGCAATTCACCACTGAACTTGATGCAGCAATATAGCTACAACAGCAACCCAAATAACAGAATGAAAAGTGACGGTATTTTTGAAGATTCCCAAGGTTCATTCCTATTGAACAAAAGCCAGCAATTTGGGGAGCCAATGGAGAAGAAGGATCAGCAAGGGGACGATAAGGATTTGATCAAACACTTGGTGGGCAGGTCAGATTCGATGTCGGATTGCAGCGATCAGAACGAAGACGATGATGATGGGAAGTACAGGCGTAGGAATGGGAAAGGGAATCAATCGAAGAATCTTCTGGCAGAGAGGAGGAGGAGGAAAAAGCTGAACGATAGCTTGTATAATCTTCGATCTTTGGTTCCCAGAATTTCGAAGCTGGACAGAGCATCGATTCTTGGGGACGCGATTGAGTACGTGAAGGATTTGCAGAAGCAAGCGAAAGAGCTGCAAGATGAGCTCGAGGAACATTCAGAAATGGATGAACAACAAGCACCACCAGATAATGTTGTTGGGGTTGAAATGGGACCAGAAGCCGATCAAATGAAAACCCAAAATGGGTTTCATGTGGGGAAATCAGGGAACGACTATATGTGGAAGGCAAAACAAGAGTTTGATGCTCCAAACGACAAGCAAACACAACATATGGAGCCACAAGTGGAAGTGGCAGTTATAGAAGGGAATGAGATGTATGTTAAGGTGTTCTGTGAGCACAGACCTGGTGGGTTCGTGAAACTGATGGAAGCATTCTATGCTCTGGGCTTCGAAGTCGTCCATGCAACCGTCACCAGCCACAAAGGCCTCGTCTCCAATGTTTTCAAAGTAGAGAAGAAGGAGGATGAAATGGTAAAAGCGGAAGAGGTGAGGGAGTCATTGATGGAGCTTATGAGGAATCCATGTAGAGGGTGGAATCATCATGAGATGAGCACAAGTGTGGCATCAGAGAATAAAGTGGCAATAAGGGACTATCATCATCAGCAAGAGCAGCAACAACAGCTTCATAATCTTCACAACCACCACATGGCTGCTGCTTATAACCCCCACCATTTACACCACATTCATACTTGA 2727 0.4514 MNTVVQNLSEKLRPLVGLNAWGYCVHWKLSKDRRSLFWEACSCAGTEGRQNGGDKLLFPVSSVAPCRDTMFHHPRTESCALLSQLPVFITLDSGTVGTQVLIPVPGGLVELFATKQVLEDHQVIDFVASCCNLAVERTESKNFEAEIKKRERLIKNLLSLRSLVPRISGRGAASIIGDTIEYVKDLQKQVKQLQEEFLQLEKISEVDEQEAPDNVVGDEMGTKADQIKTRKQELDVTQNKQTQQKEGQVEVEMIEGNELYVKVLCEHRPGGFVKLMEAFHSLGLHVICAKVVTSHQGLVSNVFKVQRKEINEIVKAEEVRESLVELMRKPDRGRNHKMKLAFPTAPITPVAADMNIITQSLSERLRPLVGLNGWDYCVHWKLSQDQRFLEWLGCSCAGTEGSQNGGEELLFPVSSAAPCRDTMFPHPSTKSCDLLSQLPTSITLDSGIHAETLLSNQPNWLNYSNSLDPNTLEETIGTQVLIPVPGGLIELFVTKQVQEDQQVVDFVTAHSNINMSFDIDVNSISNMQPNMNPLLGDENDGNTIASETSSLPPHDQCNSPLNLMQQYSYNSNPNNRMKSDGIFEDSQGSFLLNKSQQFGEPMEKKDQQGDDKDLIKHLVGRSDSMSDCSDQNEDDDDGKYRRRNGKGNQSKNLLAERRRRKKLNDSLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQAKELQDELEEHSEMDEQQAPPDNVVGVEMGPEADQMKTQNGFHVGKSGNDYMWKAKQEFDAPNDKQTQHMEPQVEVAVIEGNEMYVKVFCEHRPGGFVKLMEAFYALGFEVVHATVTSHKGLVSNVFKVEKKEDEMVKAEEVRESLMELMRNPCRGWNHHEMSTSVASENKVAIRDYHHQQEQQQQLHNLHNHHMAAAYNPHHLHHIHT 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1867 908 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 496 848 - -
Alju02g1867 908 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 361 508 IPR025610 -
Alju02g1867 908 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 649 712 IPR036638 GO:0046983
Alju02g1867 908 SMART finulus 653 702 IPR011598 GO:0046983
Alju02g1867 908 SMART finulus 148 192 IPR011598 GO:0046983
Alju02g1867 908 MobiDBLite consensus disorder prediction 528 582 - -
Alju02g1867 908 CDD ACT_UUR-ACR-like 785 849 - -
Alju02g1867 908 ProSiteProfiles ACT domain profile. 260 335 IPR002912 -
Alju02g1867 908 SUPERFAMILY ACT-like 783 849 IPR045865 -
Alju02g1867 908 Coils Coil 828 851 - -
Alju02g1867 908 MobiDBLite consensus disorder prediction 619 658 - -
Alju02g1867 908 Pfam Helix-loop-helix DNA-binding domain 654 697 IPR011598 GO:0046983
Alju02g1867 908 CDD bHLH_AtAMS_like 650 720 - -
Alju02g1867 908 Coils Coil 686 716 - -
Alju02g1867 908 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 647 696 IPR011598 GO:0046983
Alju02g1867 908 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Alju02g1867 908 Gene3D - 134 202 IPR036638 GO:0046983
Alju02g1867 908 Gene3D - 637 712 IPR036638 GO:0046983
Alju02g1867 908 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 202 IPR036638 GO:0046983
Alju02g1867 908 Coils Coil 176 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1867 Alju-ChrAlju02 17945910 17953821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1867 359 878 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 48.168 6.06e-145 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju02g1867 bHLH-MYC_N 7e-20 CL0161