Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1861 ATGGCGAGGCACCTTGCATCGCCGTGGAACAGGGAATTATTTGTACATGACAAGATAGGCTCTTTTGTTATTGAGGTTCATCATTCGATCTCAGTCCATCCCTACTCTCTGTCAATACCTCTCACGCGGTTCAGATCAGAGGAAAAAGAAAACAGTTCAAACATGGGTGTCGCTCAAAACAATCTTGATTTGGAGGAGGGAACTTTGGAGATAGGAATGGAATACAGAACTGTATCTGGTGTTGCTGGACCATTGGTCATTCTAGACAAAGTTAAGGGACCCAAATATCAAGAGATCGTTAATATTCGTTTAGGAGATGGAACTACCCGACGTGGGCAAGTTCTAGAAGTCGACGGCGAAAAGGCTGTTGTTCAGGTTTTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAGTTTACTGGAGAGGTGTTGAAAACTCCAGTCTCACTAGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCTATTGATAATGGTCCACCCATATTGCCCGAGGCTTACTTGGATATATCAGGAAGTTCTATCAACCCTAGTGAGAGGACCTATCCAGAGGAGATGATACAGACGGGAATATCTACAATTGATGTCATGAATTCCATTGCTAGAGGTCAGAAGATTCCTCTTTTCTCAGCTGCTGGTCTTCCCCATAATGAAATTGCTGCTCAGATATGTCGTCAGGCTGGCTTGGTCAAGCGACTAGAGAAGTCTGATAATCTTCTTGAGGGTGGGGAAGAAGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAATTTTTTAAACGTGACTTTGAGGAGAATGGCTCGATGGAGAGGGTGACTCTTTTTCTTAATCTGGCAAATGATCCAACAATTGAGCGCATTATCACTCCTCGTATTGCTCTAACAACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTTCTTGTGATACTTACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGTGAAGAAGTGCCTGGAAGGCGTGGTTATCCAGGTTACATGTATACAGATCTTGCAACAATCTATGAACGTGCCGGAAGAATTGAGGGGCGAAAAGGCTCTATTACACAAATTCCAATTCTGACCATGCCAAACGATGACATCACCCATCCAACTCCTGATCTAACGGGATACATTACTGAGGGGCAGATATACATAGATAGGCAGCTGTATAACAGACAGATATACCCGCCAATCAATGTCCTTCCATCACTGTCTCGGTTGATGAAGAGTGCCATTGGTGAGGGAATGACTCGAAGGGATCATTCTGATGTTTCGAATCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTTGGAGAAGAAGCACTTTCATCTGAGGATCTGCTGTATCTGGAATTTTTGGACAAGTTCGAGAGGAAGTTTGTTGCCCAGGGAGCTTATGACACCCGCAACATCTTCCAGTCACTAGACCTTGCATGGACTTTGCTTCGGATTTTCCCCCGTGAGCTGCTTCATCGTATACCAGCAAAGACTCTTGACCAATATTATAGCCGAGACGCCAGTAATTAA 1629 0.4389 MARHLASPWNRELFVHDKIGSFVIEVHHSISVHPYSLSIPLTRFRSEEKENSSNMGVAQNNLDLEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDASN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1861 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 437 IPR027417 -
Alju02g1861 542 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 59 540 IPR022879 -
Alju02g1861 542 CDD ATP-synt_V_A-type_beta_C 441 535 - -
Alju02g1861 542 FunFam V-type proton ATPase subunit B, brain 83 542 - -
Alju02g1861 542 Gene3D - 83 542 - -
Alju02g1861 542 Hamap V-type ATP synthase beta chain [atpB]. 72 540 IPR022879 -
Alju02g1861 542 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 201 431 IPR000194 GO:0005524
Alju02g1861 542 NCBIfam V-type ATPase subunit B 74 540 IPR005723 GO:0033180|GO:0046961|GO:1902600
Alju02g1861 542 PIRSF V-ATPsynth_beta/V-ATPase_B 66 542 IPR022879 -
Alju02g1861 542 ProSitePatterns ATP synthase alpha and beta subunits signature. 422 431 IPR020003 GO:0005524
Alju02g1861 542 CDD V_A-ATPase_B 146 439 - -
Alju02g1861 542 CDD ATP-synt_V_A-type_beta_N 74 145 - -
Alju02g1861 542 Pfam ATP synthase alpha/beta family, beta-barrel domain 78 144 IPR004100 GO:0046034|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1861 Alju-ChrAlju02 17884682 17892784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1861 53 542 Primary Pumps ATPases(2) AT4G38510 96.939 0.0 974