Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1822 ATGGGAGGTTTGAGTTGTGTAGTGGGAAGTTGCCCGCACCATCGGTTCCTTGCATCTTTATGTATAAATTATGAGCGGTCGGTAAAAACGTTATCGCCGCCATCGACCCTTCCTGGTTATACAGACAAAAGAATAAGTGGAAATGGCTGCTTTACGAAATTCCGAATAAGTATCAGGCCTCTGTCTGCATTGCCCGATAATAACGATTCCGGGCACTCCAACTCAATCCTTACTAACGAGGACGACATTAATGAAGGAACACCAGCACTGCCAGAATTAACAGGATGGAGGCTGCTCGCCGGAAATTCAGGAATAATATCGTCGTGCTTGGTTGGCCTTCTGACCGGCGTTGCTGTTGTGCTCTTCAATTATCTAGTTCATGAAATTCGTGATTTGTTATGGGACGGGATTCCCTATCGAGGGGCCTCGTGGTTGAGAGAAGAGCCTCTTCAGGAAAACTGGACTAGGATAATCTTAGTACCCGCTTTTGGGGGCTTGAATGTTGCCATGTTGAGCCTACTTCTTCAACGTATTGCTTCTGCTGAGGAAGATCCATTGCGTCGCACATCTGCTTATCTCAAGTCTGCTTCCCAACCTATTATAAAGGCTATGCAAGCTTGTATCACTTTAGGCACGGGGAATTCCTTGGGTCCTGAGGGTCCCAGTGTTGATATTGGTACTTCCACTGCCAAAGGTGTTGGTTTTTTCTTTGACAAGAGTTCTAGCAGAATGTTATCTCTTTTGGCCGCTGGATCTGCTGCTGGAATTTCTTCTGGTTTCAATGCCGCTGTTGCTGGTTGCTTTTTCGCTGTAGAGTCTATCTTATGGCCCTCACCTGTAGATGCATCTATGTCACTTACAAATACTACGTCTACGGTAATACTAAGTGCTGTCATAGCTTCAGTTGTTTCTCAGGTTGGTCTTGGTTCTGAACCTGCCTTCAAAGTTCCGGATTATGACTTTCGTTCAATTGGTGAGCTACCATTGTATCTATTGCTGGGTATCTTTTGTGGCTTGGTGTCACTGGCCCTATCTTTGTGCACTTCATATATGATAGCAACTGTTGACTATCTTCACAAAGCCACCGGCATACCAAGAGCTTTATTTCCTGTATTGGGTGGTTTATCTGTTGGGCTAATAGCATTGGCATATCCTGAAATTCTTTACTGGGGCTTTGAGAATGTTGACATTTTGTTAGAATCTAGGCCATTTGCGAAGAGTCTTTCCGTTGACCTACTTCTTCAGCTAGGAGCCATTAAGATTGTTGCAACTTCTCTGTGTCGGGCTTCTGGATTAGTGGGAGGTTATTATGCCCCATCTCTCTTTATTGGTGCAGCTACCGGGATGGCGTATGGGAAATTCATTGGTTATATTGTTGCTGAGGTCAATCCTATAATTCATCTGTCTGTTTTGGAAGTGGCATCACCTCAAGCTTATGGCCTGGTTGGAATGGCAGCAACTCTCTCAGGAGTATGTCGGGTGCCTCTTACTTCTGTCTTGCTGCTGTTTGAACTGACCCAAGACTATCGGATTGTTCTACCACTTCTTGGAGCTGTAGGCTTGTCTTCATGGATTTCATCTGTAGAGACAAAGAAAGGGAATGGCCGTGGTGCAGTGGAGCGCAAACTTATAAACTCAGATTCTATTATTCGTCTTGAAAATTCTCCCAGTAGTTCAATTGATTCATCTACTGATTGTTCAATTGAATCATCTGTAGAGACAAAGAAAGCGAATGACCGTGGTACGGTGGATTGCAAACTTATAAACTCAGGTTCTATTATTCGTCTAGAAAATTCTTCCATTGAATCACCTACTGATTGTTCTGTTGCTGAAAGTGTGCCTGATACAAGTAACTTGTGTCAAGGTGAAAGTCTGCTTTGTGTAGAGGATGATATTGTTGCAACCTCATATTTAAGAAGAAAGACATTAGTCTCACAAGCCATGAAGACGAGATATGTGACAGCCTCAATGGGTACACGGCTTACAGAAGTAGTAAATCTCATGCTTGCTGAGAAACAGTCCTGTGCAGTGATTGTTGGTACTGATCATACTTTAATTGGCTTTTTGACACTTAGAGACATTGGAGAGAACAGCAAATTTGCAAAAACTAGAAGCAAAAAACCCAAGGAGCTTGTAGTTTCAGAACTATGCCTTTTAGGAGGTGGAATATGTAGTGTTCCATGGACTGCTACTCCTGATATGGATCTTCTTTCTGCTCAAGTGGCTATGAAGAAACATGGAGTCAATCAAGTTCCAGTCGTTGAAAAGCTCAATGAAAGGGCATATCCTGTTGGCATATTAGACAGTGACAGTATCAGTTTGACTTGCAGTGCTTTGGCCACTAAAGAATCCCTCTCGTAA 2361 0.4333 MGGLSCVVGSCPHHRFLASLCINYERSVKTLSPPSTLPGYTDKRISGNGCFTKFRISIRPLSALPDNNDSGHSNSILTNEDDINEGTPALPELTGWRLLAGNSGIISSCLVGLLTGVAVVLFNYLVHEIRDLLWDGIPYRGASWLREEPLQENWTRIILVPAFGGLNVAMLSLLLQRIASAEEDPLRRTSAYLKSASQPIIKAMQACITLGTGNSLGPEGPSVDIGTSTAKGVGFFFDKSSSRMLSLLAAGSAAGISSGFNAAVAGCFFAVESILWPSPVDASMSLTNTTSTVILSAVIASVVSQVGLGSEPAFKVPDYDFRSIGELPLYLLLGIFCGLVSLALSLCTSYMIATVDYLHKATGIPRALFPVLGGLSVGLIALAYPEILYWGFENVDILLESRPFAKSLSVDLLLQLGAIKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFIGYIVAEVNPIIHLSVLEVASPQAYGLVGMAATLSGVCRVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWISSVETKKGNGRGAVERKLINSDSIIRLENSPSSSIDSSTDCSIESSVETKKANDRGTVDCKLINSGSIIRLENSSIESPTDCSVAESVPDTSNLCQGESLLCVEDDIVATSYLRRKTLVSQAMKTRYVTASMGTRLTEVVNLMLAEKQSCAVIVGTDHTLIGFLTLRDIGENSKFAKTRSKKPKELVVSELCLLGGGICSVPWTATPDMDLLSAQVAMKKHGVNQVPVVEKLNERAYPVGILDSDSISLTCSALATKESLS 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1822 786 Pfam Voltage gated chloride channel 193 526 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju02g1822 786 PRINTS Chloride channel signature 495 514 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju02g1822 786 PRINTS Chloride channel signature 477 493 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju02g1822 786 PRINTS Chloride channel signature 432 452 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju02g1822 786 PRINTS Chloride channel signature 253 272 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju02g1822 786 PRINTS Chloride channel signature 202 221 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju02g1822 786 Pfam CBS domain 644 694 IPR000644 -
Alju02g1822 786 CDD CBS_pair_voltage-gated_CLC_euk_bac 648 773 - -
Alju02g1822 786 ProSiteProfiles CBS domain profile. 648 704 IPR000644 -
Alju02g1822 786 SMART cbs_1 651 699 IPR000644 -
Alju02g1822 786 SMART cbs_1 726 777 IPR000644 -
Alju02g1822 786 CDD Voltage_gated_ClC 112 523 - -
Alju02g1822 786 SUPERFAMILY CBS-domain pair 641 772 IPR046342 -
Alju02g1822 786 Gene3D - 630 774 IPR046342 -
Alju02g1822 786 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 103 779 - -
Alju02g1822 786 SUPERFAMILY Clc chloride channel 105 531 IPR014743 -
Alju02g1822 786 Gene3D Clc chloride channel 100 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1822 Alju-ChrAlju02 17484511 17491495 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1822 108 299 Ion Channels AT3G27170 27.064 5.20e-06 48.1