Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1766 ATGATGGAGAGTGATAATGAAAGTGGGTTGAAGAAGGGGCCATGGACAGCAGAAGAGGACAAAATACTTGTGGATTACATAGAGAAGAATGGACATGGAAGCTGGAGAGCACTTCCAAAGCTGGCAGGATTGAACAGATGTGGCAAAAGTTGCAGACTCAGATGGACTAACTACCTAAGGCCTGACATCAAAAGAGGCAATTTCTCTGACCAAGAACAGCAACTCATCATCAATTTGCATGCTGTCCTTGGCAACAAGTGGTCGACTATAGCAGCTCATCTACCAGGGAGAACTGACAATGAAATAAAAAATTTTTGGAATACTCATTTGAAGAAGAAGCTCTTGCAAATGGGATTAGACCCTGTCACTCATCGTCCAAGATCTCATCAACTCAATCTTCTCTCCAATCTCCAACACTTACTATCTTCTCTCTCACCAAATAATAACCCTAATTATAATCATCATCATCATTGGGACAACATTCTTAATACCATTCAAACTTTGTCCCCTTCACAACTAGCTAACCTCCATTTGCTCCACAACTTAATTCAAGTCCTCGCAACTACTACTGCTACTGCTAGAAACCCAGCTGCGTTTAATCTGGAGCCACTTGTAAATCCCGGCTCAATGATGGATCAACTTCTCTTACAAGAACATCAAAATATCGGAAATTTTCATTCTCTTTCAAATTTGTCAAATGTTGAGGGTCTTCATCAGCAGCTGCAGCATCTACCAGTGAGTGACGGTCATGAGCTTCTTAAGGTAATGCCATGTTTGGCTGATCCGGTGGCATCGGCTTCGAGTTCGCTTCCCAATCTGGTTTCACCCACACCTGATTGCTCCCCATCACCATCTTCTTTTAACAAAATGAAAGACAAGGTATTAAACCAAAATGATGGCATTCCTGATCCTTCTACTTCAACAAGTACCTTTGATGCTTTGGGAGATTTTATGGATGAACAAGCAAGTGAAGCTTTCTGGAAACATCTTATTGACCAAGAAACTAACCAGCCATGGTCTATCTCATAA 1029 0.415 MMESDNESGLKKGPWTAEEDKILVDYIEKNGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGNFSDQEQQLIINLHAVLGNKWSTIAAHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSHQLNLLSNLQHLLSSLSPNNNPNYNHHHHWDNILNTIQTLSPSQLANLHLLHNLIQVLATTTATARNPAAFNLEPLVNPGSMMDQLLLQEHQNIGNFHSLSNLSNVEGLHQQLQHLPVSDGHELLKVMPCLADPVASASSSLPNLVSPTPDCSPSPSSFNKMKDKVLNQNDGIPDPSTSTSTFDALGDFMDEQASEAFWKHLIDQETNQPWSIS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1766 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 193 - -
Alju02g1766 342 Gene3D - 11 64 - -
Alju02g1766 342 SMART sant 64 112 IPR001005 -
Alju02g1766 342 SMART sant 11 61 IPR001005 -
Alju02g1766 342 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Alju02g1766 342 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Alju02g1766 342 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Alju02g1766 342 Pfam Myb-like DNA-binding domain 65 110 IPR001005 -
Alju02g1766 342 Gene3D - 67 114 - -
Alju02g1766 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Alju02g1766 342 FunFam Transcription factor MYB39 67 128 - -
Alju02g1766 342 CDD SANT 67 110 IPR001005 -
Alju02g1766 342 FunFam MYB-related transcription factor 11 64 - -
Alju02g1766 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
Alju02g1766 342 CDD SANT 14 59 IPR001005 -
Alju02g1766 342 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1766 Alju-ChrAlju02 16900215 16902280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1766 6 332 MYB Transcription Factor Family AT5G16770 47.904 4.00e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju02g1766 Myb_DNA-binding 2.2e-15 CL0123