Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1696 ATGATTGCTTTAGGTGGTGTGTCCTCAAGGCCTTGCCTTTGCCGTCGTCTTAGTTCATTGATGGTTCTGGGTGTGTTGCCGTGTCTCTCGATACGCTCTCCAGTTCTCTTCAGAGAAGGTGTGACAATGGCGTACGCGATGAAGCCTACTGCCAAACCGGGTTTGGAGGAACCCCAAGAGCAGATACATAAAATTAGGATTACGCTGTCCTCCAAGCACGTGAAAAATCTTGAGAAAGTTTGTGCGGACTTAGTTCGTGGTGCCAAGGACAAGAGGCTTAGGGTCAAGGGACCTGTAAGGATGCCCACTAAAGTTCTCCTCATTACCACTAGGAAATCTCCTTGTGGTGAAGGTACCAACACTTGGGATAGGTTTGAGCTCAGGGTTCACAAGAGAGTGATCGACCTCTACAGCTCTCCTGATGTGGTGAAGCAGATCACCTCCATCACAATTGAGCCCGGCGTCGAGGTTGAGGTCACAATTGCTGACGCTTGA 495 0.497 MIALGGVSSRPCLCRRLSSLMVLGVLPCLSIRSPVLFREGVTMAYAMKPTAKPGLEEPQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1696 164 SUPERFAMILY Ribosomal protein S10 64 161 IPR036838 -
Alju02g1696 164 ProSitePatterns Ribosomal protein S10 signature. 88 103 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Alju02g1696 164 Gene3D Ribosomal protein S10 domain 49 163 IPR036838 -
Alju02g1696 164 SMART Ribosomal_S10_2 66 160 IPR027486 -
Alju02g1696 164 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 51 163 IPR001848 GO:0003735|GO:0005840|GO:0006412
Alju02g1696 164 Pfam Ribosomal protein S10p/S20e 66 160 IPR027486 -
Alju02g1696 164 Hamap 30S ribosomal protein S10 [rpsJ]. 62 161 IPR001848 GO:0003735|GO:0005840|GO:0006412
Alju02g1696 164 NCBIfam 30S ribosomal protein S10 63 161 IPR005729 GO:0003735|GO:0006412|GO:0015935
Alju02g1696 164 PRINTS Ribosomal protein S10 family signature 64 77 IPR001848 GO:0003735|GO:0005840|GO:0006412
Alju02g1696 164 PRINTS Ribosomal protein S10 family signature 99 114 IPR001848 GO:0003735|GO:0005840|GO:0006412
Alju02g1696 164 PRINTS Ribosomal protein S10 family signature 121 135 IPR001848 GO:0003735|GO:0005840|GO:0006412
Alju02g1696 164 FunFam 40S ribosomal protein S20 48 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1696 Alju-ChrAlju02 15935552 15941025 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1696 43 164 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 90.244 1.48e-74 217