Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1670 ATGGTTGTGAATGAAAGGCCGTCAAAGAGGATGAAGCGGAGAGTTTCAGCAGATCTTTATGATTTTCTCACTTTTCCGGCCGCCAGTGACCGCTGCTTAGACGATGTGATCGTCGGCGGCCAACCGTTCCGGAAAACCGTTCAGAGTTTTCTTACTAATTATGCTATGGTCACCTATCCACCGTCCTTGTTTTCGTCTTTGATGACGTGGCAGATATTGTTCCGGATCGGAGGACTCGTCGATGGGTCCGATCTTTCACCGGCGTTTGTCACTCTCCACATTGTGGAGGAGGACGTAACTCGATCTCGCTCCTCCGTATACTGTGATCAGTGCCGAGTTGTTGGTTGGAGTGGCCATCCTGTATGTAGAAAGCGATATCACTTCATTATCCGAGCTTCAACTAATCACATGGATGCATATGAAAGACCTTGCTCTTTCTGTGGGAAATCTACTGGATTATCTGAAGCAAGGTGTAAATGGTGTGACGCTGCGATTACCGTTGAAGATCTCGAGGACTGGGTGTATAGTCAAATTGAAGATAACACTCATCTTCTGCACGGGATTGTCCACTCCAATGGTCATGGCCATTTGCTTACTCTTAATGGGAGAGAGGGTGGTTCAAAGTTTCTCTCTGGGTCTGACATAATGAGTTTCTGGGATAGGCTTTGTGCTTCACTTGCTGTTAGGAAGGTTAGTGTGATGGATGTGTCAAAGAAATTTGGGATGGAATACCGGTTGCTTCATGCAATCACCAATGGGTGTTCTTGGTATGGGAATTGGGGTTATGAATTTGGGACTGGTAGCTATGCTCTCACTCAAGACTCCTACCAAAATGCAGTGAATACCCTGTCAAGCATGCCCCTGTCAGATTTATTATTCCAGGATCGGGGGCCCCCAAGTCGCTTACAGCGTGTTATTTCTCTCTATCAATCTCTGGCCGATGCTGAACTTTTAACTATAAAAGATCTATTCTCCTTTTTGGTGACCTTAATTCGTGAGTTCCACAAGCCTTTGACCACCAGTACGTCGAGTGCTGAAACTTGCAATGTGTTGTGTGCTTGGACAAGCAATGACGTTGAAGCTGTGCAACAGGCTTTGATCAAGGTACTGCGTGCATCGGCTTCTTCTAGTGGGGCCAAATGGGTGACAAGACGAACTCTCAAGGGCGCATTAGGTAGGGGTGTTACATCTCCAGAGCTTCTAGATTACAGTCTGAAACATCTGGGTGGAAAAGTAACTGCCTATGGTATGGTAGTTAGGTCAAGATGCAATCCCACATCTAGTGCTGTGGAGTACAGGCTTGAATCCTTGAATGTTACTGAAAATGAAGTTAGTGCGAATTCAGGATATCCATCAAAAGAGCAAGTGATTGGTGATTTGAAATTCTTGCTTGATTCGATTATTCATCCTGGTACGATGGTGAGCTACAGACCCAAGATTATGAGAAAAAGGGTGGCTGATTCGGCAAGGAAGCTCCTTGACTGCAAGCAGTTCATGAAGGATTACAAGCCTGATAAGATGGCAGGTGAAGAAGTGGCTTCATATATTAGGCTGTGGTGTCATGTGGAGCTTTCCGATCAGCCAAAAGAAGATCCAACCCCTCCTCCAGAACTGATTTTGCTGCCCTTGAATGCTACTGTAGCCGACCTCAAAAATGAAGTGACCAATACTTTCCAAGAAGTGTATGCCATGTATAAGAGATTTCAAGCCGAGGAACTTCTGGAATATGGGTCCATCAAGGACAACCTCACGGTGAAGTTACTGCTTGGAACAAGTGGGTCTGTCCGAATTTTAGGTAAATGCCATGCAAAACATGGCCTTAATCGCTTCCGAATGGAGAGAGGAACTGAGACGTGGAAAGTTGATTGCCCTTGTGGGGCTAAGGATGATGATGGGGAGAAAATGTTAGCATGTGATACTTGCGGTGTTTGGCAACATACGAGGTGTGCTGGAATTGATCATTCGAATGCTGTTCCCTTTAAGTTCGAATGCATGAGATGCATCAAATCATACCGCAAGGATGCCAAGAAACAGACTTTCCCTGTTGAACCAAAAAACTACTCTGTTGAACCAAAAATCAACCCTATAGATGAAGAAAAAAGCTGCATAATGGATATGAATGAAGCAAAAAGCTACGCTGTGTATGAAGCAGAGGTTCACCCTATGGTGTATGAAGCACAAAGCTACGCTGTGTATGAAGCAGGGATCCACCCTGTGGTTGAAGCAAATAAAACTTTGAAGCAGAACGGCTCTGTGGATGAAGCAAGAACCCCCAGTAAAGCGAAAACGTCATGCAGGGGAGAGGTGGTAGTAGCGGATGGTACAGCAGTTGCTTGCAATCTGGCTCTGAATTTTGGCGTTCGCTGA 2367 0.455 MVVNERPSKRMKRRVSADLYDFLTFPAASDRCLDDVIVGGQPFRKTVQSFLTNYAMVTYPPSLFSSLMTWQILFRIGGLVDGSDLSPAFVTLHIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRASTNHMDAYERPCSFCGKSTGLSEARCKWCDAAITVEDLEDWVYSQIEDNTHLLHGIVHSNGHGHLLTLNGREGGSKFLSGSDIMSFWDRLCASLAVRKVSVMDVSKKFGMEYRLLHAITNGCSWYGNWGYEFGTGSYALTQDSYQNAVNTLSSMPLSDLLFQDRGPPSRLQRVISLYQSLADAELLTIKDLFSFLVTLIREFHKPLTTSTSSAETCNVLCAWTSNDVEAVQQALIKVLRASASSSGAKWVTRRTLKGALGRGVTSPELLDYSLKHLGGKVTAYGMVVRSRCNPTSSAVEYRLESLNVTENEVSANSGYPSKEQVIGDLKFLLDSIIHPGTMVSYRPKIMRKRVADSARKLLDCKQFMKDYKPDKMAGEEVASYIRLWCHVELSDQPKEDPTPPPELILLPLNATVADLKNEVTNTFQEVYAMYKRFQAEELLEYGSIKDNLTVKLLLGTSGSVRILGKCHAKHGLNRFRMERGTETWKVDCPCGAKDDDGEKMLACDTCGVWQHTRCAGIDHSNAVPFKFECMRCIKSYRKDAKKQTFPVEPKNYSVEPKINPIDEEKSCIMDMNEAKSYAVYEAEVHPMVYEAQSYAVYEAGIHPVVEANKTLKQNGSVDEARTPSKAKTSCRGEVVVADGTAVACNLALNFGVR 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1670 788 CDD PHD_MMD1_like 622 667 - -
Alju02g1670 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 674 IPR013083 -
Alju02g1670 788 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 676 - -
Alju02g1670 788 SMART PHD_3 622 668 IPR001965 -
Alju02g1670 788 Pfam PHD-finger 623 669 IPR019787 -
Alju02g1670 788 SUPERFAMILY FYVE/PHD zinc finger 613 670 IPR011011 -
Alju02g1670 788 ProSitePatterns Zinc finger PHD-type signature. 623 667 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1670 Alju-ChrAlju02 15330901 15334024 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1670 40 667 PHD Transcription Factor Family AT5G22260 29.518 6.28e-83 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju02g1670 PHD 2.1e-07 CL0390