Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1652 ATGATGAAAGACAATGACGTCAGTAGAGGTTTGAAAGAAGCTTCATATGAAGAACTATGGAAGCTATGTGCTGGACCCTTGACCGATGTCCCCCAAGTGGGAGAGAGAGTTTTCTACTTTCCCCAGGGTCATTTGGAGCATGTAGAATATTTGACAAATCAAGAATTTGACCAGGGAATAATTCCTCATTTTAATCTTCCCTCTCATATTCTCTGTAGAGTCGTAAACATTCAGCTTTTGGCTGAACCAGAAACTGATGAAGTATATGCAAGCATCACTCTGCTACCTGACTTCGAAAGTAATCCAAAAGTTCCGGATCAAAACCCAACTGAAACCCCTAAACAAGAATTGCAATCATTCTGCAAAATATTAACAGCCTCTGATATTAGCAAACATGAAGGAGTTTTAGTTCTGCAAAAGCATGCTGCTAAGTGCCTTCCTCAGCTGGACATGACTCAAAAAAATCCAACTCAAGAGTTGGTTGCTAGAGATCTACATGGGTTTGAATGGAAGTTCAAACATGTATATAGAGACCAAGCAAAGACACATCTTCTCACAACTGGGTGGAGCAACTTTGTATCATCCAAAAGGTTGAATGCAGGGGATGCTTTCTTGTTCTTAAGGGGACCAAAGGATAATGACTTATGGTGTGGTGTTAAGCATCTAACAAGGCAACAGAGTGCTGTTCAATCATCTGTGATCTCAAGCCAATGCATGCACCTAGGAGTTCTTTCAACTGCCTCACATGCTATCATGACTGGCTCTATGTTTGCAGTCTATTACAAGCCAAGGATTAGCCAGTTCATTGTTCGCTCGAACAAATATCTAGAGGCGGTGAACAAAAACTTTTCTATTGGCATGCCGTTTATGATGAGATTTGAGGGACATGACTCACTTGAGATATTGAGGTTCTCAGGTACTATTGTTGGTGTCGGGGATTTATCTCCAGTATGGCCTGTGTCTCAATGGAAGTCGTTAAAGGTTCAATGGCATGAACCGGCGGCGATCCCAAGGCCCAAGAGGATTTCCCCCTGGGAAATAGAGCCCTTTTCACCTTCTGCATTTGCAAACACTTCTCGATTAACAGTAGTAAAGAACAGAAGGCTTAGGCCTGTTAGTATCTCGTCTTCTGGAATTGCTTCCAGCTCAACTACTTCTCCACCATTAAACACCAATAGTAGCTCAAGGATGAGAGTGGATGGAATATGGCCAGATTCTCCATTGTTGCGTGTCTCTTCAAGCTTTTCTTATGAGCCAAGAAACAACGAAGCTAGTACATCAACACAAGCTTCTGCCTCTGGTTACGCTCCTGTTTCAAGGAGGCTTAACAATGGCGAACATGATCAGGTTGAAAATGAAGAGGAAAGTGGGAGTTCCAAGAATATGGGTCGAGGAGAAACTTTACTTGCCCAATTTAAAGAGGAATTCACTCAAGAACTCTTCAATAGAGCTTTACCTTTCAAAAAAGCTCTACTTCACCGCATTCGATATCGTGCTAGGAAGATTTCACTTAAAAATTGGTTATTACCAAGCAAAGACACATCTTCTCACAACTGGGTGGAGCAACTTTGTCTCATCCAAAAGGTTGAATGCAGGAGATGCTTTCTTGTTCTTAAGAGTGCTGTTCAATCATCTGTGATCTCAAGCCAATGCATGCACCTTGGAGTTCTTTCAACTGCCTCACATGCTATCATGACTGGCTCTATGTTTGCAGCCTATTACAAGCCAAGGATTAGCCAGTTCATTGTTCGCTCGAACAAATATCTAGAGGCGGTGAACAAAAACGTTTCTGTTGGCATGCCGTTTGTGATGAGATTTAAGGTACTATTGTTGGTGTCGGGGATTTCTCTCTGGCTTGTGTCTCAATGGAAGTCGTTAAAGGTTCAATGGCATGAACCGGCGGCGATTCCAAGGCCCAAGAGGATTTCCCCCTGGGAAATAGAGCCCTTTCCACCTTCTGCATTTGCAAACACTTCTCGATTAACAGTAGTAAAGAATAGAAGGCTTAGGCCTGTTAATATCTCATCTTCTGGCATTGCTTCCAGCTCAACTACTTCTCCACCATTAAACACCAATAGTAGCTCAAGGATGAGAGTGGATGGAACATGGCCAAATTATCCATTGAGGCTTAACAATGGCGAACATGATCAGGTTGAAAATGAGGATGAAAGTGGGAGCTCCAAGAATATCTAG 2193 0.4254 MMKDNDVSRGLKEASYEELWKLCAGPLTDVPQVGERVFYFPQGHLEHVEYLTNQEFDQGIIPHFNLPSHILCRVVNIQLLAEPETDEVYASITLLPDFESNPKVPDQNPTETPKQELQSFCKILTASDISKHEGVLVLQKHAAKCLPQLDMTQKNPTQELVARDLHGFEWKFKHVYRDQAKTHLLTTGWSNFVSSKRLNAGDAFLFLRGPKDNDLWCGVKHLTRQQSAVQSSVISSQCMHLGVLSTASHAIMTGSMFAVYYKPRISQFIVRSNKYLEAVNKNFSIGMPFMMRFEGHDSLEILRFSGTIVGVGDLSPVWPVSQWKSLKVQWHEPAAIPRPKRISPWEIEPFSPSAFANTSRLTVVKNRRLRPVSISSSGIASSSTTSPPLNTNSSSRMRVDGIWPDSPLLRVSSSFSYEPRNNEASTSTQASASGYAPVSRRLNNGEHDQVENEEESGSSKNMGRGETLLAQFKEEFTQELFNRALPFKKALLHRIRYRARKISLKNWLLPSKDTSSHNWVEQLCLIQKVECRRCFLVLKSAVQSSVISSQCMHLGVLSTASHAIMTGSMFAAYYKPRISQFIVRSNKYLEAVNKNVSVGMPFVMRFKVLLLVSGISLWLVSQWKSLKVQWHEPAAIPRPKRISPWEIEPFPPSAFANTSRLTVVKNRRLRPVNISSSGIASSSTTSPPLNTNSSSRMRVDGTWPNYPLRLNNGEHDQVENEDESGSSKNI 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1652 730 Gene3D - 117 221 IPR015300 -
Alju02g1652 730 MobiDBLite consensus disorder prediction 675 700 - -
Alju02g1652 730 Gene3D - 612 654 - -
Alju02g1652 730 ProSiteProfiles B3 DNA-binding domain profile. 120 223 IPR003340 GO:0003677
Alju02g1652 730 SUPERFAMILY DNA-binding pseudobarrel domain 110 250 IPR015300 -
Alju02g1652 730 MobiDBLite consensus disorder prediction 419 438 - -
Alju02g1652 730 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 421 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju02g1652 730 MobiDBLite consensus disorder prediction 444 460 - -
Alju02g1652 730 Gene3D - 282 355 - -
Alju02g1652 730 MobiDBLite consensus disorder prediction 419 464 - -
Alju02g1652 730 CDD B3_DNA 119 219 IPR003340 GO:0003677
Alju02g1652 730 MobiDBLite consensus disorder prediction 714 730 - -
Alju02g1652 730 Pfam B3 DNA binding domain 120 216 IPR003340 GO:0003677
Alju02g1652 730 Pfam Auxin response factor 560 607 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju02g1652 730 Pfam Auxin response factor 247 327 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju02g1652 730 MobiDBLite consensus disorder prediction 374 398 - -
Alju02g1652 730 SMART B3_2 120 220 IPR003340 GO:0003677
Alju02g1652 730 FunFam Auxin response factor 282 354 - -
Alju02g1652 730 MobiDBLite consensus disorder prediction 675 730 - -
Alju02g1652 730 FunFam Auxin response factor 118 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1652 Alju-ChrAlju02 14927032 14937554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1652 539 680 B3 DNA Binding Superfamily AT2G46530 46.452 2.21e-34 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju02g1652 B3 3.2e-17 CL0405