Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1549 ATGGAGAAGAAAAAGAAGATTAATAACAATGGTGGCAAGATGTGCATGATCTGCAAAAGGTGGTTCGCTAGCGGAAAAGCTGTCGGAGGGCATATGAAGTCTCACTTTGCCAAACTTCCTATCCCTCCCAAGCCTGCTCCAATATCTCCAATTGCAGATCAAGTTCCTTCAAAAGTATACAAAATCGATGTTAATGGTGGTTCATCCTCAACCCATCAGCATCCTGAACAAAACTTTCACTCCATGAATCATCAAGACTTTGCAGAAAGAGTTTCGAAACTCGTCGATGACGACCAAGGAAGCGAAAAATCAGATCAATCTTACATGACTAGTAAGAAATCTAAACTTAGTTGTCGTAAGATTGATGATCCAACAACAAGAGCATTAATAATGTGGTCGCCGTCTAGGACAAAAGTTGATGAAGACAACAACCCAAAACAAACAGGTTTGATCTTTGATTCTTGCTTTCCGGCTATAAATGCTGCTTTGACTCTCATGTTGCTTTCCAAGGAGAAATGGCCCCAAGGCAAAGAATTGAGCATCAAGAAGAAACAAAAAGTGAAGGATAATGAGAATGAACAAGAAGACTCATATGTAGAGGACCGCTCTCATGGCGGCAGAAGGTCGCTCGAGTGTGAGATGGGCACGAAAGTTTTCGGATCTTACCAGGCACTTGGTGGGCACAAAGCAAGCCACAAAAAATTCATCAAGAATGATGAATTGGAGGTAGATGGTGAATTTGATGAAGAAAATGGGTATGATGTTCTTGAAGATCCAAAAGTGTTCAAGTGCCTCCACTGCTCCAAAGTGCTTGGATCTAGCCCAGGACTTGGAAGACACAAGAAGATACACTTTCCCAATGCTATGAAATTTGGAGCCAAATACATAGATCTTAACTCATCTGCTCCAGTGGAAGATATTGAAAAGAATAGCCAAGATTATGATTGA 948 0.4114 MEKKKKINNNGGKMCMICKRWFASGKAVGGHMKSHFAKLPIPPKPAPISPIADQVPSKVYKIDVNGGSSSTHQHPEQNFHSMNHQDFAERVSKLVDDDQGSEKSDQSYMTSKKSKLSCRKIDDPTTRALIMWSPSRTKVDEDNNPKQTGLIFDSCFPAINAALTLMLLSKEKWPQGKELSIKKKQKVKDNENEQEDSYVEDRSHGGRRSLECEMGTKVFGSYQALGGHKASHKKFIKNDELEVDGEFDEENGYDVLEDPKVFKCLHCSKVLGSSPGLGRHKKIHFPNAMKFGAKYIDLNSSAPVEDIEKNSQDYD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1549 315 ProSitePatterns Zinc finger C2H2 type domain signature. 264 284 IPR013087 -
Alju02g1549 315 Pfam C2H2-type zinc finger 217 234 - -
Alju02g1549 315 Pfam C2H2-type zinc finger 15 35 - -
Alju02g1549 315 Gene3D Classic Zinc Finger 180 286 - -
Alju02g1549 315 MobiDBLite consensus disorder prediction 94 116 - -
Alju02g1549 315 MobiDBLite consensus disorder prediction 178 206 - -
Alju02g1549 315 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Alju02g1549 315 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 13 308 IPR044303 GO:0006355
Alju02g1549 315 SMART c2h2final6 210 232 IPR013087 -
Alju02g1549 315 SMART c2h2final6 13 35 IPR013087 -
Alju02g1549 315 SMART c2h2final6 262 284 IPR013087 -
Alju02g1549 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 284 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1549 Alju-ChrAlju02 13753974 13754921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1549 15 308 C2H2 Transcription Factor Family AT3G60580 28.710 1.44e-19 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju02g1549 zf-C2H2_6 0.00021 CL0361