Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1548 ATGGAGAAGAAAAAGAAGATTAACAACAATGGTGGCAAGATGTGCATGATCTGCAAAAGGTGGTTCGCTAACGGAAAAGCTATGGGAGGTCATATGAAGTCTCATCTTGTCAAACTTCCTATCCCTCCCAAGCCTGCTCCAGTGTCTCCAATTGCAGATCAAGTGCCTTCAAAAATATCCAAAGTCAATGTTGATAGTGCTTCATCCTCAACCCATCAGCGGTCGATCTTATTTTCTCCACCAAAATGTCATCAACTGATGATGAAATCGAGTACTGAACTGAACTTTCACCCCATGAATCATCAAGAATTTGCAGCAAGAGTTTCAAAACTCATCGATGACGACGACGAAGGAAGCAAAGAATCAGATCAATCTTACATGACTGGAAGGAGATCTAAACGTTGCCGTAAAATTGATGATGCAACAAGAGCATTAACGAGGCCATGTTCGACAAAAGTTGATGAAGAAGACAATCCGAAACAAACAGGTCTGATATTTGATTCTTGCTTTCAAGCTATAAATGCTGCTTTGACTCTCATGTTGCTTTCCAAGGAGAAATGGCCCCAAGGCAAAGAATTGATCATCAAGAATGAACAAGAAGACTCATATGTGGAGGTTCACTCTCATGGCAGCGGAAGGTCGTTCGAGTGCGAGGTGTGCACAAAAGTTTTTGGATCTTACCAGTCACTTGGTAGGCACAAAGCAATCCACAAAAAGTTAATCAAGAATGATGAATTCGAGGTAGATGGTGAATTTGATGAAGATGATGATGATGATGTTCTTGAAGATCCAAAAGTCTTCAAGTGCCCCCACTGCTCCAAAGTGCTTGGGTCTAGCCAAGGACTTGGAAGACACAAGAAGATACACTTTCCCAATGCTATGAAATTTGGGGCCAATGACAGAGATCTTAACTCACCTGCTCCAGTGGAAGATATGGAAGAGAATAGCCAAGATTATTGA 960 0.4167 MEKKKKINNNGGKMCMICKRWFANGKAMGGHMKSHLVKLPIPPKPAPVSPIADQVPSKISKVNVDSASSSTHQRSILFSPPKCHQLMMKSSTELNFHPMNHQEFAARVSKLIDDDDEGSKESDQSYMTGRRSKRCRKIDDATRALTRPCSTKVDEEDNPKQTGLIFDSCFQAINAALTLMLLSKEKWPQGKELIIKNEQEDSYVEVHSHGSGRSFECEVCTKVFGSYQSLGRHKAIHKKLIKNDEFEVDGEFDEDDDDDVLEDPKVFKCPHCSKVLGSSQGLGRHKKIHFPNAMKFGANDRDLNSPAPVEDMEENSQDY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1548 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 289 IPR013087 -
Alju02g1548 319 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 13 313 IPR044303 GO:0006355
Alju02g1548 319 SMART c2h2final6 267 289 IPR013087 -
Alju02g1548 319 SMART c2h2final6 13 35 IPR013087 -
Alju02g1548 319 SMART c2h2final6 215 237 IPR013087 -
Alju02g1548 319 ProSitePatterns Zinc finger C2H2 type domain signature. 269 289 IPR013087 -
Alju02g1548 319 SUPERFAMILY beta-beta-alpha zinc fingers 213 289 IPR036236 -
Alju02g1548 319 Pfam C2H2-type zinc finger 15 35 - -
Alju02g1548 319 Pfam C2H2-type zinc finger 266 289 - -
Alju02g1548 319 Pfam C2H2-type zinc finger 215 239 - -
Alju02g1548 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 237 IPR013087 -
Alju02g1548 319 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
Alju02g1548 319 MobiDBLite consensus disorder prediction 112 133 - -
Alju02g1548 319 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Alju02g1548 319 MobiDBLite consensus disorder prediction 296 319 - -
Alju02g1548 319 Gene3D Classic Zinc Finger 191 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1548 Alju-ChrAlju02 13749349 13750308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1548 15 313 C2H2 Transcription Factor Family AT3G60580 28.972 1.20e-24 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju02g1548 zf-C2H2_6 6.2e-08 CL0361