Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1540 ATGCACATCAAGGAAATTTGCTTGGAAGGTTTCAAATCGTATGCTACCAGAACCGTTGTTCCAGGTTTCGATCCCTATTTCAATGCCATCACGGGGTTAAACGGTTCCGGCAAGTCGAACATACTTGATTCGATTTGCTTTGTACTTGGGATCACGAATTTGCAGCAGGTTCGGGCTTCTAACCTTCAGGAGCTCGTGTATAAGCAAGGACAGGCGGGGATTACAAAAGCTACAGTGTCGATTGTGTTTGATAATGCGGATAGGAGTCGAAGCCCTCTTGGATATGAAGACCATCCAGAGATTACAGTGACAAGACAGATTGTAGTTGGTGGAAGGAACAAATATCTGATCAACGGGAAACTTGCCCAGCCTAGTCAAGTTCAAAACCTTTTTCATTCTGTGCAGCTGAATGTTAACAACCCACATTTTCTCATAATGCAAGGGCGCATCACCAAAGTTTTAAATATGAAACCACCTGAGATATTGTCAATGCTTGAGGAAGCTGCAGGAACAAGAATGTATGAGACGAAGAAAGAGGCTGCACTAAAAACACTTGAAAAAAAGCAGAGTAAGGTTGATGAGATTAATAAGCTTCTTGACCAGGAGATACTGCCTGCATTGGAGAAGTTAAGGAAAGAAAGGACGCAGTACATGCAGTGGGCTAATGGCACTGCTGAGTTAGATAAGCTGAGAAGGTTTTGTATTGCTCACGAATATGTTCAAGCAGAGAGGATTAGAGACAATGCAATGTCTGAGGTGGAACAAGTGAAGGCCAAAATAGCTGAGATTGATGACTCTACTAAGACCACAAAGGTGGAAGTACAGGCAATGGAGACCAAAATGACAAGATTGACGGCGGAAAAGGAAGAACGCATGGGCGGGGAAGTGAAATCTTTGTCAGACAAAGTAGATACACTTTCACAGAATCTTGTGAGGGAAACATCTATACTAAATAATAAAGAGGACACTCTGAGAAGTGAAAAATCCAATGAAGAAAATATTGTTAATAATATTGAAGACTTGAAGCAATCTGTTGAAGAGAAGGCCTTAGCTGTGAAAAAGGCTGAAGAGGGAGCTTCTGATCTGAAAAGGAGGGTTGATGAGCTTTCTAAGACCTTGGAGGATCATGAAAAGGAATATCAGGGTGTACTAGCTGGGAAGAGCAGTGGAAATGAGGAGAAATGCTTAGAGGATCAGCTAGCTGATGCAAAGATAGCAGTTGGGAATGCTGAAACAGAATTGAAACAGCTAAAAACTAAAATTAGCCACAGTGAAACAGAACTGAAAGAGAAAGCACATCAATTAAGGTCAAAACAGGTAGAAGCTACTGCTGTGGAAAATGAGCTAAATGCTAGAAAGAAAGATGTGGAGACTGTGAAGACGCAATTGGAGTCTCTTAGTTATAAAGATGGTGAGATGGAATCTTTGCAAAAGGAGCGCGCATCTGAGATGGAGTCAGTGCAAAAGTGGAAGGATGAAATACGCAAGCTTTCAGCACAATTAGCAAATGTTGAGTTTACTTACCGTGACCCAGTCAAGAACTTTGATAGGTCAAAGGTGAAAGGTGTGGTTGCAAGACTTATCAAAGTAAAGGACAGGGCTGCAATGACCGCCCTGGAGGTTACTGCTGGTGGAAAGTTGTTCAATGTTGTAGTTGACACAGAAAATACTGGAAAACAACTACTGCAGAATGGTGATTTAAGAAGAAGAGTGACAATTATACCTTTAAACAAAATTCAATCCCATACTGTTCCCTCTAGAATTCAACAAGCTGCTTCTAGATTGGTTGGTGAGGAGAATGCTGAGCTGGCACTTTCTTTGGTTGGTTATGAAGAAGAATTGAAGAGTGCTATGGAATATGTATTTGGTTCTACCTTTGTGTGCAAAAACACTGATGCTGCTAAGGAGGTGGCATTTAATCGGGAGATTCGAACCCCCAGTGTCACTCTTGAAGGAGACATATTTCAGCCAAGTGGTCTTTTGACTGGTGGAAGCCGAAAGGGTGGCGGCCAACTTTTAAGGCAACTTCATGATTTAGCAGAGGCTGAGTCAAAACTTTCAATACACCAAAGAAGGTTGTCTGAGGTTGAGGCAAAGATTACAAAGCTTCTTCCCCTTGAGAAGAAATGGAAAGACCTCAAAACACAGTTGGAACTTAAATCATATGATCTTTCATTGTTTCAAAGCAGAGCTGAGCAAAATGAGCATCATAAGCTTGGGGAACTAGTGAAGAAGATTGAGCAAGAACTTGCAGAAGCAAAATCTGCAGTCAAGGAAAAGCAAATTATTTATGAAAACTGTGTCAAGGCTGTTTCATCACTTGAGAAATCAATTAAAGAACATGACAATAATCGTGAAAGTAGACTAAAAGATCTGGAGAAGAAGATAAAGTCATTCAAATCCCAAATGCAGTCATCTTTAAAAGATCTTAAGGGACATGATAATGATAAGGAGAGACTTGTAATGGAAATGGAAGCTGTTATTCAGGAGCGTGTGTCCTTGGAGAATCAATTAGCTTCTTTAAGAACGCAGATTCATAATTTTGAATTAGAAGTAGAAGAACAAAAAATAAAGGTTGCTGCTGCAAGGACTGATCATGATCGGGTTCATTCAGAACTAAACTCAGTTCGCCTAAAAATGAAGGAATGTGACAAGGAAATAAGTGTTATCATGAAGGAGCATAAAATGCTTGAACACAAGCTCAGTGAAAATAATCTTGAAAGGAAGAGAATGGAGAACGAGGTAAAAAGGATGGAGATGGAACAAAAAGACTGTTCGGTCAGGGTGGAGAAATTGATAGAGAAACATGCATGGATTACTTCTGAAAAACAGCTGTTTGGCAAAAGTGGGACTGATTATGATTTTTCTTCTCGTGATCCGGGTAAAGCAAGGGAAGAACTTGAGAAGCTACAAGCTGAGCAGTCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTCATGGCGATGTTTGAGAAGGCAGAGGATGAGTACAATGATTTGATATCCAAGAAAAACATAATTGAGAATGACAAGTCTAAAATCAAGAAGGTGATCGAAGAGCTAGATGAGAAGAAAAAGGAAACACTAAGTGTTACCTGGGTTAAAGTCAACAAGGACTTTGGATCCATCTTTTCTACTTTACTTCCGGGGACAATGGCGAAGTTAGAACCCCCTGAAGGTTGCAGTTTTCTTGATGGTCTTGAAGTTCGTGTTGCATTTGGGAGCGTGTGGAAACAGTCCCTGTCAGAACTAAGTGGTGGTCAACGATCATTACTTGCACTTTCTCTGATTCTTGCACTGCTGCTATTCAAACCTGCTCCAATTTACATCCTTGACGAGGTTGATGCGGCACTTGATTTAAGCCACACACAAAACATAGGGAGAATGATAAAGTCCCATTTTCCTCACTCCCAGTTTATTGTGGTTTCACTGAAGGAAGCAAGTGATATATTGAGGTGGCCACGTGTAGCAAATTGTATTAATGTCTTAAGTTTAAGCAGTGTATAG 3504 0.4067 MHIKEICLEGFKSYATRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNADRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKERTQYMQWANGTAELDKLRRFCIAHEYVQAERIRDNAMSEVEQVKAKIAEIDDSTKTTKVEVQAMETKMTRLTAEKEERMGGEVKSLSDKVDTLSQNLVRETSILNNKEDTLRSEKSNEENIVNNIEDLKQSVEEKALAVKKAEEGASDLKRRVDELSKTLEDHEKEYQGVLAGKSSGNEEKCLEDQLADAKIAVGNAETELKQLKTKISHSETELKEKAHQLRSKQVEATAVENELNARKKDVETVKTQLESLSYKDGEMESLQKERASEMESVQKWKDEIRKLSAQLANVEFTYRDPVKNFDRSKVKGVVARLIKVKDRAAMTALEVTAGGKLFNVVVDTENTGKQLLQNGDLRRRVTIIPLNKIQSHTVPSRIQQAASRLVGEENAELALSLVGYEEELKSAMEYVFGSTFVCKNTDAAKEVAFNREIRTPSVTLEGDIFQPSGLLTGGSRKGGGQLLRQLHDLAEAESKLSIHQRRLSEVEAKITKLLPLEKKWKDLKTQLELKSYDLSLFQSRAEQNEHHKLGELVKKIEQELAEAKSAVKEKQIIYENCVKAVSSLEKSIKEHDNNRESRLKDLEKKIKSFKSQMQSSLKDLKGHDNDKERLVMEMEAVIQERVSLENQLASLRTQIHNFELEVEEQKIKVAAARTDHDRVHSELNSVRLKMKECDKEISVIMKEHKMLEHKLSENNLERKRMENEVKRMEMEQKDCSVRVEKLIEKHAWITSEKQLFGKSGTDYDFSSRDPGKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLISKKNIIENDKSKIKKVIEELDEKKKETLSVTWVKVNKDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPIYILDEVDAALDLSHTQNIGRMIKSHFPHSQFIVVSLKEASDILRWPRVANCINVLSLSSV 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1540 1167 Coils Coil 736 763 - -
Alju02g1540 1167 Coils Coil 393 434 - -
Alju02g1540 1167 Pfam RecF/RecN/SMC N terminal domain 2 1145 IPR003395 -
Alju02g1540 1167 Coils Coil 178 198 - -
Alju02g1540 1167 Gene3D - 801 995 - -
Alju02g1540 1167 Coils Coil 982 1026 - -
Alju02g1540 1167 Coils Coil 324 379 - -
Alju02g1540 1167 FunFam Structural maintenance of chromosomes 2 518 584 - -
Alju02g1540 1167 Coils Coil 894 928 - -
Alju02g1540 1167 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1145 - -
Alju02g1540 1167 SUPERFAMILY Tropomyosin 682 892 - -
Alju02g1540 1167 Coils Coil 239 266 - -
Alju02g1540 1167 Gene3D - 577 667 - -
Alju02g1540 1167 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Alju02g1540 1167 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Alju02g1540 1167 PIRSF SMC 1 1147 IPR024704 GO:0005524|GO:0016887
Alju02g1540 1167 Gene3D - 996 1152 IPR027417 -
Alju02g1540 1167 Coils Coil 789 809 - -
Alju02g1540 1167 Coils Coil 473 507 - -
Alju02g1540 1167 Coils Coil 817 865 - -
Alju02g1540 1167 FunFam Structural maintenance of chromosomes 2 1 202 - -
Alju02g1540 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1143 IPR027417 -
Alju02g1540 1167 SUPERFAMILY Smc hinge domain 476 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Alju02g1540 1167 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Alju02g1540 1167 Coils Coil 679 699 - -
Alju02g1540 1167 Gene3D - 518 677 - -
Alju02g1540 1167 Gene3D - 1 203 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1540 Alju-ChrAlju02 13637509 13646583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1540 2 170 Structural Maintenance of Chromosomes family AT5G15920 23.077 1.97e-07 53.5