Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1533 ATGAAATCCGGTTCTCTAGAATACTGGAGGAACTATTTTGGAACTGCAAATTCTGATATATTCGATATAATTGACCACGCGATTATGGTGGCGGTTTCCGATTGTCCGTACGAATTTAGATTACGAAGGGACCAGATTTCGGAACGTTTGTTTTCTTGGAGATTGACTCATTGTTTGGGGTGTAATCGATTAAGGTTGGCGGTTTCCGGTGATGATAAAGAAAATGGAGGTTGTGAGTGTAGTTTTGGTCAAAACTCTACTGAATTAGGAGGTGCTAGTAAAAAGAGCATGGCCAATAGTGGCAGAAACGATCACGGAGAGATGATCAGGAACCAAGTTAGTAATTTTAGTTTTGGAGAAGCTGAGGGATTGAGTGGTGTGATTGAAAAAGACTCTATTATAGTTACGGAGATTTTGAGGATCAAAGAGATTCTCCGTAAGGAAGAGGCTGATTCAGTGTTGTTTGAGTCACTGAGGAGGCTGCAGCCGCTGGCACTGACCGTGGACCTTCTTAAGGAAACTGAGATTGGGAAGGCTGTCAATCCTCTCAAGAAGCACTCCTCCAAGGAGATCCGTCAACTTGCACGAACTCTTATCGATGGCTGGAAAGCAATGGTAGATGAATGGATCAAGTCCACAGAAGCTATAGAAGATTCAATTAATCCATCAGTCGTTAATAAAGAGGAAGGGCTTCCTTCTCCTCCTCTGGATGAAGTTGCTATGAGACAGGGCAAACCGGTCTGCACTAATTCTAGCTCTGGCAGGCAACCAAAATCCAGCCTGCCGCAGAAAACCAACACAGGACCAAAGATACAGCAGAAACGAGAGATATATGCTATCCGAATGAGGCCTCTTGTTTCTCAGCAAGATTGTCAGAAATTCAAGTGTTCAGATGATGTTTCAGTCCAAGCAAAACTAGAAGCCACTAAGAGGAAACTTCACGACTCTTATCAACAAGCTGCAAATGCCAAGAAGCAGCGGACAATACGGGTTATGGAGTTGCATGATCTTCCGAAGCAACTGCAAGGGAATGGCCACCGAAATCCACACTCCAAGCTACGGAAGGCTTTGGGACAAAGAAAATAG 1086 0.4401 MKSGSLEYWRNYFGTANSDIFDIIDHAIMVAVSDCPYEFRLRRDQISERLFSWRLTHCLGCNRLRLAVSGDDKENGGCECSFGQNSTELGGASKKSMANSGRNDHGEMIRNQVSNFSFGEAEGLSGVIEKDSIIVTEILRIKEILRKEEADSVLFESLRRLQPLALTVDLLKETEIGKAVNPLKKHSSKEIRQLARTLIDGWKAMVDEWIKSTEAIEDSINPSVVNKEEGLPSPPLDEVAMRQGKPVCTNSSSGRQPKSSLPQKTNTGPKIQQKREIYAIRMRPLVSQQDCQKFKCSDDVSVQAKLEATKRKLHDSYQQAANAKKQRTIRVMELHDLPKQLQGNGHRNPHSKLRKALGQRK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1533 361 SMART TFS2_5 135 208 IPR003617 GO:0005634
Alju02g1533 361 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 220 IPR035441 -
Alju02g1533 361 Coils Coil 306 326 - -
Alju02g1533 361 Pfam TFIIS helical bundle-like domain 158 206 IPR017923 -
Alju02g1533 361 MobiDBLite consensus disorder prediction 245 272 - -
Alju02g1533 361 MobiDBLite consensus disorder prediction 338 361 - -
Alju02g1533 361 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 129 219 IPR035441 -
Alju02g1533 361 CDD TFIIS_I 137 207 - -
Alju02g1533 361 ProSiteProfiles TFIIS N-terminal domain profile. 136 209 IPR017923 -
Alju02g1533 361 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 246 352 IPR044805 -
Alju02g1533 361 MobiDBLite consensus disorder prediction 221 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1533 Alju-ChrAlju02 13504106 13506082 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Alju02g1533 Med26 2.7e-13 No_clan