Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1503 ATGATGGTGGCGGTTTTCGATTGTCTGAACGAATTTAGATTACGAAGGGACGGGATTTTGGAAAGTTTGTTTTCTAATAAAGATGGAGGTTGTAAGAGTGGTTTTGATCAAGAAGCTACTAAATTAGAAGCAAGATCTGGTAAAGAGAGCAAGGCCAGTAGTAGCAGAGACAATCAAGGAGGGACGAACAAGAACCAAGTTAGTAATCTTAGTTCTGGACAAGCTGATGAGATTTTGAGGATCAAAGAGATTCTCCACAACAGCAAGGAAGAGACTGATTCAGTGTTATTTGAGTCATTGAGGAGGCTGCAGCTACTGGCACTGACCGTGGACCTTCTTAAGGAAACTGAGATTGGAAAGTCTGTCAATCCTCTTAAGAAGCACTCCTCCACGGAGATCCGTCAACTTGCACGAACTCTTATCGATTTTGTATCTAGCCTCATGGGTATTGATCGACCTCGTGAGTTTTGCGGGATAACCATGAAGTCCAGTTCAGTAGAATACTGGAGGAATTACTTTCGAACTGCAAATTGTGATATATTCGATATAATTGACCACGCGATCCTTGTGGCGGCTTCCGATTGTCCGAACGAATTTAGATTACGAAGAGACAGGATTGCTGAACGTTTGTTTTCTAGTAAAGATGGAGGTTGTAAGAGTGGTTTTGATGAAGAAGCTACTAAATTAGAAGCAAGATCTAGTAAAGAGAGCAAGGCCAATAGTGGCACAGGGAGGGAGGAACAAGAACCAATATTATTTGAGTCATTGAGGAAGCTGCAGCCACTGGCACTGACCGTGGACGTTCTTAAGGAAACTGAGATTGGAAAGGCTGTCAATGCTCTCAAGAAGCACGGCTCAAAGGAGATCCGTCAACTTGCACGAACTCTTATCGATGGCTGGAAGGCAATGGTAGATGAATGGATCAAGTCCACAGATTCAATTAATCCATCGGTCGTTGATGAAGTTACTGTGAGACAGAGTACACCAGCCTGCACTGATTCTGGCCCTGGCAGGCATCCAAAATCCAAGTGTTCAGATGATGTTTCAGTCGAAGCAAAACTAGAAGCCACTAAGAGGAAACTTCACGACTCTTATCAACAAGCTGCAAATGCCAAGAAGCAGCGAACGATCCGGGTTATGGAGTTGCATGATCTTCCAAAGCAAGGGAATATTGGCCCCCGAAATCCACACTCCAAGCTTTGGAAGGCTCTGGGACGAAGAAAATAG 1227 0.4401 MMVAVFDCLNEFRLRRDGILESLFSNKDGGCKSGFDQEATKLEARSGKESKASSSRDNQGGTNKNQVSNLSSGQADEILRIKEILHNSKEETDSVLFESLRRLQLLALTVDLLKETEIGKSVNPLKKHSSTEIRQLARTLIDFVSSLMGIDRPREFCGITMKSSSVEYWRNYFRTANCDIFDIIDHAILVAASDCPNEFRLRRDRIAERLFSSKDGGCKSGFDEEATKLEARSSKESKANSGTGREEQEPILFESLRKLQPLALTVDVLKETEIGKAVNALKKHGSKEIRQLARTLIDGWKAMVDEWIKSTDSINPSVVDEVTVRQSTPACTDSGPGRHPKSKCSDDVSVEAKLEATKRKLHDSYQQAANAKKQRTIRVMELHDLPKQGNIGPRNPHSKLWKALGRRK 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1503 408 CDD TFIIS_I 75 142 - -
Alju02g1503 408 MobiDBLite consensus disorder prediction 53 69 - -
Alju02g1503 408 MobiDBLite consensus disorder prediction 42 69 - -
Alju02g1503 408 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 248 316 IPR035441 -
Alju02g1503 408 CDD TFIIS_I 226 305 - -
Alju02g1503 408 Coils Coil 354 374 - -
Alju02g1503 408 ProSiteProfiles TFIIS N-terminal domain profile. 229 307 IPR017923 -
Alju02g1503 408 SMART TFS2_5 228 306 IPR003617 GO:0005634
Alju02g1503 408 SMART TFS2_5 75 146 IPR003617 GO:0005634
Alju02g1503 408 MobiDBLite consensus disorder prediction 386 408 - -
Alju02g1503 408 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 74 142 IPR035441 -
Alju02g1503 408 Pfam TFIIS helical bundle-like domain 100 142 IPR017923 -
Alju02g1503 408 Pfam TFIIS helical bundle-like domain 256 304 IPR017923 -
Alju02g1503 408 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 335 398 IPR044805 -
Alju02g1503 408 ProSiteProfiles TFIIS N-terminal domain profile. 76 151 IPR017923 -
Alju02g1503 408 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 67 147 IPR035441 -
Alju02g1503 408 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 221 316 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1503 Alju-ChrAlju02 13017671 13024266 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Alju02g1503 Med26 5.5e-14 No_clan