LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju02g1476	ATGGATGTTGAAGCAGTGGATGAAGGAGAAAGCAATGATAGACTTGAAGTAATTAATCATAGTGGTGATGCAGATATGAAACCACAAGTGGGCATGCTGTTTGAAACAGAAGATGCTGCAAGATCATTTTATGATGCATATGCAAGGCGAGAGGGTTTTAGCACCCACGTGGGTCAGTTCAGCCGTACAAAACCTGATGGTCCAATTATAACTTGGGACTATTCTTGTACTAGGGAGGTCTTGAAAAGGAAGAACATAGAAAGTTGCAATGCAATGCTTAGAATAGAGAGAAAAGATGCCAACAGCTGGATTGTCACAAAATTTGTTGAGGACCATAACCATTCCCTGGTCTCCCCTGGCAAGGTGCACCATCTTCAACCACGTAGGCATTTTGCTGGTGCTACAAGGAATGCTTCTGAGATATTCAATGCTACCAGTGATGCCTATATCTCAACAGATGGGAATCATGTATTTCATGAACCAACTCGTGTAGTCAGGAGTTCCTCTCCGGTAGATCTAAATTATCGATCCAGAAACACTATTCCTTTAACATATGTAAGACCTACTCGAAATAGGACCCTTGGAAGAGATGCTCAAAATCTTCTGAATTATTTTAAGAAGATGCAAGCAGAAAATCCTGGCTTTTATTATGCTATACAACTTGATGATGAGAACCGCATGACCAATGTGTTTTGGGCTGATGCAAGGTCAAGAGCAGCCTATAACTACTTTGGTGATACTGTAGTTTTTGATACAATGTATAGACCAAATCAATACCAAGTCCCATTTGCTCCCTTTACAGGAATCAATCACCATGGTCAAATGGTTTTATTTGGTTGTGCATTACTTTTGGATGAATCAGAGTCTTCCTTTACCTGGCTATTCAAGACATGGCTATCTGCTATGAATGATCGACCTCCTGTTTCATTAACAACAGACCAAGATAGAGCTATTCAAGCTGCTGTTGCCAAGGCCTTTCCAGGAACTCGCCACTGTATTTGCAAGTGGCACATTTTGAGGGAAGGTCAAGAAAGATTAGCTCATGTTTACCTAGCTCATCCTTCTTTTTACGGAGAGCTGTATAGCTGCATTAATTTCTCTGAGACTGTTGAGGACTTTCAATCAACATGGAATTCTCTGCTAGATAAATATAAGCTTCAGAAAAATGAATGGCTTCAGGCAGTGTTTAATGCTCGCAAACAGTGGGCCCCTGTTTATTTCCGTGGCACATTCTTTGCTGCACTCACTGCAAACCATGGGGCCAGCTCCTTTTTTGATGGCTATGTGAACCAGCAGACAAACTTACCTTTATTCTTTAAGCAGTATGAAAGGGCTCTTGAGCAGTCATTGGAAAAAGAAATAGAAGCTGATTATGATACAATTTGCACCACACCAGTGTTGAAGACTCCATCACCAATGGAACAACAGGCTGCAAATCTTTACACAAAGAAGATTTTTGCAAAGTTTCAAGAGGAACTGGTGGAAACTTTTGCGCATACTGCTGACAATATTGACAGTGATGGTGTGGTCGGTAAATACAGGGTTGCAAAATATGAACATGATCACAAGGCATACATGGTAACTTTAGATGCTTCTGAATTGAAAGCAAATTGCAGCTGTCAAATGTTTGAATACTCGGGCATTCTTTGCAGGCATATTTTGACTGTATTTACTGTCACAAATGTTCTTACCCTTCCACCACGCTACATATTGAAGCGGTGGACAAGGAATGCTAAATTTACTGTGCAATCAGATGATCAAATTTTAGATTCACATGCCATTGAAACCCTCACCCTACGTTTCAATAGTATATGTCATGAAGCCATTAAACTTGCTGAAGAAGGAGCAGCAGGAGTGGAAACTTATAATACTGCCATGAATGCTTTAAGAGAGGGTGTGAAAAAGGTTGCTGTTGTGAAAAAAAATGTTGTGAAAGTCACACCTCCAAGTGCTCAGGGTAATGAAAGTAGTCAGGAAGATCATAGCAAGAAGAGCCCTTTATCCACGTGGCAAGATCCAGTGCCACATTGCTTTAATCTTAATGATGTTGGGCTTCCTGTTGCTGATCTTAATCAACCAAGTATGGCTCCTGTTTCTATTTGTCGCAATGGTGGTCCTCCTGATAACCCTGTTGTTCTTACGTATTTCAAGTCTATTAGTTGGGTCATTGAAGATAAGAATTCAATCTCAACCAGTAAAGCAGCAATGATTAACTTAAAGCTTCAAGATTATGGCAAGAACCCTCCGGCCGAGAATGAAATTCAATTTCGGGTAACAAGGGTCACTTTGGAGCCTATGATGAGATCTATGGCTTATATCAGTCAGCAACTCTCCGCACCAGTCAATAAAGTTGCCGTCATCAATCTGAAGCTCCAGGACACAAAGACAACTACTGGGGAAACACAAGTGAAATTCCAGGCTTCCAGGGATACACTAGGTTCCATGCTCAAGTCTATGGCCTTTGTGCGCGACCAGCTATGA	2481	0.4111	MDVEAVDEGESNDRLEVINHSGDADMKPQVGMLFETEDAARSFYDAYARREGFSTHVGQFSRTKPDGPIITWDYSCTREVLKRKNIESCNAMLRIERKDANSWIVTKFVEDHNHSLVSPGKVHHLQPRRHFAGATRNASEIFNATSDAYISTDGNHVFHEPTRVVRSSSPVDLNYRSRNTIPLTYVRPTRNRTLGRDAQNLLNYFKKMQAENPGFYYAIQLDDENRMTNVFWADARSRAAYNYFGDTVVFDTMYRPNQYQVPFAPFTGINHHGQMVLFGCALLLDESESSFTWLFKTWLSAMNDRPPVSLTTDQDRAIQAAVAKAFPGTRHCICKWHILREGQERLAHVYLAHPSFYGELYSCINFSETVEDFQSTWNSLLDKYKLQKNEWLQAVFNARKQWAPVYFRGTFFAALTANHGASSFFDGYVNQQTNLPLFFKQYERALEQSLEKEIEADYDTICTTPVLKTPSPMEQQAANLYTKKIFAKFQEELVETFAHTADNIDSDGVVGKYRVAKYEHDHKAYMVTLDASELKANCSCQMFEYSGILCRHILTVFTVTNVLTLPPRYILKRWTRNAKFTVQSDDQILDSHAIETLTLRFNSICHEAIKLAEEGAAGVETYNTAMNALREGVKKVAVVKKNVVKVTPPSAQGNESSQEDHSKKSPLSTWQDPVPHCFNLNDVGLPVADLNQPSMAPVSICRNGGPPDNPVVLTYFKSISWVIEDKNSISTSKAAMINLKLQDYGKNPPAENEIQFRVTRVTLEPMMRSMAYISQQLSAPVNKVAVINLKLQDTKTTTGETQVKFQASRDTLGSMLKSMAFVRDQL	826

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju02g1476	826	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	11	637	IPR031052	GO:0006355
	Alju02g1476	826	MobiDBLite	consensus disorder prediction	647	669	-	-
	Alju02g1476	826	SMART	26again6	536	563	IPR006564	GO:0008270
	Alju02g1476	826	Pfam	SWIM zinc finger	527	559	IPR007527	GO:0008270
	Alju02g1476	826	Pfam	FAR1 DNA-binding domain	42	117	IPR004330	-
	Alju02g1476	826	Pfam	MULE transposase domain	248	340	IPR018289	-
	Alju02g1476	826	ProSiteProfiles	Zinc finger SWIM-type profile.	525	561	IPR007527	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju02g1476	Alju-ChrAlju02	12661566	12667172	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Alju02g1476		MULE	4.9e-26	CL0219