Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1388 ATGACGTCTGGCGGTGGAAACACAGGGGTAGAGTGGCACGTGCGGCCTCCTAACCCTAAGAACCCCGTTGTGTTCTTCGATATCACCATCGGTAACATCCCCGCTGGTAGAATCAAGATGGAGCTTTTCGCTGATATTGCCCCCAAAACTGCTGAGAATTTTAGGCAGTTCTGCACTGGCGAGTACAGGAAAGCTGGTCTTCCTATTGGTTACAAAGGCTGTCAATTTCATAGGGTGATTAAGGATTTTATGATACAGGCTGGTGATTTTGTGAAGGGTGATGGGAGTGGTTGTGTTTCCATCTATGGACACAAGTTCGATGATGAAAATTTTATTGCCAAACATACTGGCCCTGGTCTTCTATCAATGGCAAATAGTGGACAGAATACCAATGGTTGCCAGTTTTTTATAACCTGTGCGAAATGTGACTGGCTTGACAACAAGCATGTCGTTTTTGGGAGGGTGCTTGGAGACGGCCTTTTGGTTGTCAGGAAGATTGAGAATGTGGCCACTGGACCCAATAACCGGCCCAAATTAGCTTGCGTCATTGCTGAGTGTGGAGAAATATGCGGACTGACAATTGGAGATGAGAATGCATACATAGACTCGTGA 612 0.4624 MTSGGGNTGVEWHVRPPNPKNPVVFFDITIGNIPAGRIKMELFADIAPKTAENFRQFCTGEYRKAGLPIGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGHKFDDENFIAKHTGPGLLSMANSGQNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEICGLTIGDENAYIDS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1388 203 FunFam Peptidyl-prolyl cis-trans isomerase 11 189 - -
Alju02g1388 203 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 25 188 IPR002130 GO:0000413|GO:0003755
Alju02g1388 203 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 146 IPR002130 GO:0000413|GO:0003755
Alju02g1388 203 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 76 88 IPR002130 GO:0000413|GO:0003755
Alju02g1388 203 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 147 162 IPR002130 GO:0000413|GO:0003755
Alju02g1388 203 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 57 IPR002130 GO:0000413|GO:0003755
Alju02g1388 203 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Alju02g1388 203 Gene3D - 11 191 IPR029000 -
Alju02g1388 203 CDD cyclophilin_ABH_like 22 187 - -
Alju02g1388 203 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 24 189 - -
Alju02g1388 203 PIRSF Peptidylpro_ismrse 12 192 IPR024936 GO:0003755
Alju02g1388 203 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 26 187 IPR002130 GO:0000413|GO:0003755
Alju02g1388 203 SUPERFAMILY Cyclophilin-like 12 189 IPR029000 -
Alju02g1388 203 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 71 88 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1388 Alju-ChrAlju02 11712578 11715918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1388 36 187 U-box Gene Family AT5G67530 43.137 1.15e-27 107