Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1336 ATGGACGATTCCTTCTCCGACGATAAGCTTTGTGGCTTCCTGTTTGCGGTTCTCGCGGTGACTCCTTCGCAACCCTACCCGTGTGCCAGTTTAGGCTTCAAAGAGCGCTGCGACATCTTTGGCGACAGTTCTAATGCCGTCGGATTCAGGTCCGAGAACGGCGTCGTTTTAGTTCCGGTGGATTCGCCGGCAAAGCAAAATGAGGGCGGGAGCGCGTCTCCTTCTGATTCAGCGCAGTGCAAAGTGGTGGGGAGGGAATATAGGATTGATTACGATAGCAATGCTCATATTTCGACTCGGAGTACTCAAAAGAAGGGCAATGTAAGAAGGAAAAATCGGGTGGTATCGGGGAGTGGTAGCTTGAGGAGGAAGAGGATGACGCAGATTGGGATGGTCAATGGGAGTGTTAGTGTGATTCACCAGCTTCACGCTTTGGTTAGCAAAAAGTGCTTAAAGATTGATGCTCGAGTGATTTTGGTTGACCTTGGGGACTGTGGCGAGGCTAGAGCAGTGGTACTGGTCGATGTGTATCTTCCAATTGCATTGTGGAGTGGCTGGCAGTTTCCAAAATCCGGGTCCACTGCTGGTGCTCTTTTTCGTCATTTGAGGTGTGGCTGGGATGAGAGAAGATCAGTTCTTTCTTGCTCAAACTATATTAGGAAGATTCAGGGGGCTTGTGAGAGTATTTGGAACCTTTGTGACTGTCATGTATTTGGGTGCAAACTCCACTACCATGCAAGAGATTCTTCAAAGAATAGTCTATTTGAACTCCATGAAATTTTTAAGAGTATACCTGGTGTAGGAAAAGAGCAGAAGCGTGATAATTCTGGGATAGTGCCCTTGAACAACTCTCAGAGATGTGGAATTTGGGAGTTATCTGATGACATTTTAACAAAAATTCTAGCTCCCCTAAGGCCAATGGACATTGCTAGGGTTTCTGCAACTTGTCGTTATATGAGATCCTTGGCTGCTTCAATAATGCCATGTACTAAGTTAAAACTGTTTCCTCACCAGCAGACAGCTGTTGAGTGGATGTTGCATCGGGAGCGAAATGCTGAACTCTTGGCACATCCTTTGTATGTTTCTTTTTCAACAGAACATGGCTTTGTTTTCCATATAAATATTGTATCTGGTGAAATAGTCATTGGGGACGCCCCCACCATTAAAGATTTTTGTGGTGGAATGTTCTGTGACGAACCTGGTTTGGGTAAGACTGTAACAACTCTTTCTCTTATACTGAAGACGCAAGGTACGTTGGCAGATCCACCAGATGGAGCAAATGTGGTTTGGTGTCGCCATAATGGTAATCTTAAATGCGGTTATTATGATATTATTGGTAGTTACATAATTGACAGTAGTAATTTGGGGAAGAGGGACATATGCCAGGATGCTCGGAATAATGAGAATCATGATCACTCCTCCAAAAGAGCTAGAATGAAGATTCCTGCAGAGAAAACCAGTGGACTTAATAATAAATGTTCTGGCGAAGAGAAAAAATCACCTATAGGTGAATACTCTGAGCAGCCAATGGCTGCAAGTCGATGTTCTTGGGGCTTGAGTTGCATAAAGAAAAATCTATGTGCCACTTTTGAAGAGGAAGCTGGGCATTCCAAAGAAAGAAAAGATAGTGTAAACTCTTTGAAACTGGAACATGCATCAAGTGCTGAAACACGTATATCCGAAAAAAAGCCAGTCAATAATTCATTTGGACATGAGAAGGGTTGTGAGAGACCTGAGAAGCCTACAGTGGATTCTATTGAGTACAATGACACTTGGATTCAGTGTGATGCTTGCCAGAAATGGCGAAAGCTTGCAGATTCCAGTATGGCTAATACTAATGCAGCGTGGTTTTGTAGTATGAACACTGATCCTTTGTATCAGAGTTGTAGCATCCCAGAACAACACTGGCATAATAGCTGTGAAATAACTTATTTACCAGGATTTCATGTGAAAGGTAGTGCAGGGGGTGAGAAGAAGAATGTTTCATTTTTCACTGGTGTACTTAAGGAGCATTACCCAATGATGAATTCTGAGACAAAGAAAGCCCTGACTTGGTTGGCCAGACTTCCACCTGACAAGCTTTCTGAAATGGAAATAAACGGCATAAGGGGTCCAGTTTTGAGCAGCTGCGTTGTGTCTACTCGATATCTTAATCCTTACCACAAGATATTTCATGCATTTGGTCTCACTAAGAAATTAGAAAAAGGTGTAAACAAGTGGTACTACCCACAAAATTTAAATAATAATTTGGCTTTTGATGTAACTGCCCTTGGCATGGCTCTGTGTGAGCCATTAGATTCATTTAGGTTATACTTGTCAAGAGCAACCCTTATAGTTGTTCCTGCTAACTTGGTTGATCACTGGAAAACTCAAATAGAAAAGCACGTCAAACATAGTCAACTGCGAGTTTATGTTTGGAATGATACTTGGAAGTGGAAGCCATCTGTGCACAGTCTGGCATGGGATTATGATGTTGTCATTACTACATTTAGTCGTCTAAGTGCAGAGTGGAGCACCTGTAAGAGAAGTGTTCTGATGCACGTCCATTGGCTGAGGATCATATTAGATGAAGGGCACACTCTTGGCTCAAGCCTGAACTTAACAAATAAGTTGCAAATGGCTATTTCATTGACAGCTTCAAATCGTTGGATACTAACAGGAACACCAACACCTAACACTCCTAAAAGTCAACTATCGCATTTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGGCTGAATCCAAAGTCATGGGAAGTTGGCATCCTTAAGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTTTCGTCTGTTGCAACTACTTCGTAACTGCATGATTAGTGCAAGGAAGATGGACTTGCATAATATCCCCCCATGCATCAAAAAAGCTGTTTTTGTAGATTTTACTGAGGATCATGCCAGAAGTTATAACGAATTGGTATTAACAGTTCGTCGTAATTTATTAATGGCTGATTGGAACGATCCTTCACACATTGAGAGTCTACTGAATCCAAAACAATGGAAATTTAGGGTTGAAACTATAAAAAATGTCAGGCTCTCGTGCTGTGTTGCTGGACATATTAAAGTTACGCACACCGGTGAAGATATCCAGGAAACAATGGATATGTTAGTAGAAAACGGTATAGATCCTGATTCAGCTGAGTATTCCTCAATAAAATATAATCTGCTTTGTGGAGGCCGATGTGTCAGGTGCAAGGAATGGTGCCGCCTGCCCTTTATTACACCATGTCGGCATCTATTGTGCCTTGACTGTGTCGCTTTAGACAGTATGAAGTGTACTTATCCTGGATGCAATAAATTATATGAGATGCAGAATCCTGATACACTAGCCCGCCCAGAAAATCCTGACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAACAGGATGCTTGGGATCCTGATTGGCAATCAACATCTAGTAGCAAGGTATCCTATCTTGTCCAGAGATTGAACGCTTTACAAGAATCCAATAAGAAGAAGGGCTACTATTCTAGCAATGATCAGGTTCTCGCTGAGAGCAATTGCCCTCTGGTGATGGGAGATGTGAAATCATCATTCCAGCAATGCCCTCCAAGCACTGAGCCCAATAATATGCCTGAGAAAGTTATTATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTACTGGTATTAAATATGCTGGGATGTATAGTCCAATGCCTTTAACCAACAAGAAGAAGTCACTGGCCACATTCCAGCATGATCCCGGTTGTATGGCACTTGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACACGTGTTTTTAATGGAACCAATCTGGGATAAAAGCATGGAGGAACAGGTAATTAGTCGTGCTCATCGCATGGGTGCTTGTCGTCCTATTCATGTGGAAACATTAGCAATGCGGGGTACAATTGAAGAGCAAATGCTTGAATTTTTACAGGATGCTGATAGAAGAAGAAATTCCCCTAGTGAAGCTGTTGTCCAATCTGATGACGGTAGAAATCTCCCAACTAAAGGTGTCATCCAATTTGAAGAAAGGGGACGAGGACGTTCTTTGCATGATTTTGTTGAAAATAGTTATCTACTGAATCTTAGATTTGTTAGCACCGATTCTAATGCCATAGAAGGTGTCTGA 4200 0.4224 MDDSFSDDKLCGFLFAVLAVTPSQPYPCASLGFKERCDIFGDSSNAVGFRSENGVVLVPVDSPAKQNEGGSASPSDSAQCKVVGREYRIDYDSNAHISTRSTQKKGNVRRKNRVVSGSGSLRRKRMTQIGMVNGSVSVIHQLHALVSKKCLKIDARVILVDLGDCGEARAVVLVDVYLPIALWSGWQFPKSGSTAGALFRHLRCGWDERRSVLSCSNYIRKIQGACESIWNLCDCHVFGCKLHYHARDSSKNSLFELHEIFKSIPGVGKEQKRDNSGIVPLNNSQRCGIWELSDDILTKILAPLRPMDIARVSATCRYMRSLAASIMPCTKLKLFPHQQTAVEWMLHRERNAELLAHPLYVSFSTEHGFVFHINIVSGEIVIGDAPTIKDFCGGMFCDEPGLGKTVTTLSLILKTQGTLADPPDGANVVWCRHNGNLKCGYYDIIGSYIIDSSNLGKRDICQDARNNENHDHSSKRARMKIPAEKTSGLNNKCSGEEKKSPIGEYSEQPMAASRCSWGLSCIKKNLCATFEEEAGHSKERKDSVNSLKLEHASSAETRISEKKPVNNSFGHEKGCERPEKPTVDSIEYNDTWIQCDACQKWRKLADSSMANTNAAWFCSMNTDPLYQSCSIPEQHWHNSCEITYLPGFHVKGSAGGEKKNVSFFTGVLKEHYPMMNSETKKALTWLARLPPDKLSEMEINGIRGPVLSSCVVSTRYLNPYHKIFHAFGLTKKLEKGVNKWYYPQNLNNNLAFDVTALGMALCEPLDSFRLYLSRATLIVVPANLVDHWKTQIEKHVKHSQLRVYVWNDTWKWKPSVHSLAWDYDVVITTFSRLSAEWSTCKRSVLMHVHWLRIILDEGHTLGSSLNLTNKLQMAISLTASNRWILTGTPTPNTPKSQLSHLQPLLRFLHEEAYGLNPKSWEVGILKPFEAEMEEGRFRLLQLLRNCMISARKMDLHNIPPCIKKAVFVDFTEDHARSYNELVLTVRRNLLMADWNDPSHIESLLNPKQWKFRVETIKNVRLSCCVAGHIKVTHTGEDIQETMDMLVENGIDPDSAEYSSIKYNLLCGGRCVRCKEWCRLPFITPCRHLLCLDCVALDSMKCTYPGCNKLYEMQNPDTLARPENPDPKWPVPKDLIELQPSYKQDAWDPDWQSTSSSKVSYLVQRLNALQESNKKKGYYSSNDQVLAESNCPLVMGDVKSSFQQCPPSTEPNNMPEKVIIFSQFLEHIHVIEQQLTITGIKYAGMYSPMPLTNKKKSLATFQHDPGCMALVMDGSAALGLDLSFVTHVFLMEPIWDKSMEEQVISRAHRMGACRPIHVETLAMRGTIEEQMLEFLQDADRRRNSPSEAVVQSDDGRNLPTKGVIQFEERGRGRSLHDFVENSYLLNLRFVSTDSNAIEGV 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1336 1399 ProSitePatterns Zinc finger RING-type signature. 1085 1094 IPR017907 -
Alju02g1336 1399 SMART helicmild6 1228 1310 IPR001650 -
Alju02g1336 1399 SMART ultradead3 330 921 IPR014001 -
Alju02g1336 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 415 IPR027417 -
Alju02g1336 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 1336 IPR027417 -
Alju02g1336 1399 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1196 1355 IPR001650 -
Alju02g1336 1399 CDD DEXDc_SHPRH-like 764 948 - -
Alju02g1336 1399 Pfam SNF2-related domain 337 990 IPR000330 GO:0005524|GO:0140658
Alju02g1336 1399 Gene3D - 755 951 IPR038718 -
Alju02g1336 1399 CDD RING-HC 1069 1094 - -
Alju02g1336 1399 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 103 1337 - -
Alju02g1336 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 773 947 IPR027417 -
Alju02g1336 1399 MobiDBLite consensus disorder prediction 486 505 - -
Alju02g1336 1399 ProSiteProfiles Zinc finger CW-type profile. 586 637 IPR011124 GO:0008270
Alju02g1336 1399 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 740 907 IPR014001 -
Alju02g1336 1399 Gene3D - 584 637 - -
Alju02g1336 1399 CDD SF2_C_SNF 1215 1320 - -
Alju02g1336 1399 Gene3D - 1106 1367 IPR027417 -
Alju02g1336 1399 CDD F-box_SF 291 323 - -
Alju02g1336 1399 Pfam Helicase conserved C-terminal domain 1212 1310 IPR001650 -
Alju02g1336 1399 Pfam CW-type Zinc Finger 591 634 IPR011124 GO:0008270
Alju02g1336 1399 SUPERFAMILY F-box domain 283 325 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1336 Alju-ChrAlju02 11018794 11024836 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1336 333 413 RAD5 or RAD16-like Gene Family AT5G22750 31.818 4.83e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju02g1336 SNF2_N 2.1e-94 CL0023