Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1327 ATGACGTCTGAGAAAAGGAGGAAAGAACGACAGTTAGGACAATTATTTCTTTTCCTACCTGTTTTCGTCCTACATGGCAACCACTACGCCCTGATATGTGCTATACCTCAAAAACTACATGCAGAGGATCAGGGGAAAATGTCTTTACAGCAGCATAATAATGTTGAGCTCAAGGGTGTTTCAGCTGTAGGGTCAGGATGTTGCCTTTATGATCTTTTGTGTGCTGAATCTCCAAATTTGCAATCCCAAAATAATCAGTGGCAGTCTTCGTCTGATCCTCTAGAAAGGTTAGGGAAGTTGATGCACGAAGCCGGGAACAATTATTGTGCTGATTGTGGGTCTCCAGAGCCAAAATGGGTATCTTCAAATATTGGAGCATTTATTTGCATCAAGTGCTCTGGCATACATAGAAGCCTAGGAGTCCATATATCAAAGGTTCTATCATTGAAGCTAGATCAATGGACAGATGATGAAGTCACTGCACTGGAAGAGTTGGGAGGGAATGCATTGGTAAATAAAAAGTATGAAGCTCGCATCCCCAGTTATATAAAAAAGCCGAAGCCGACTTCCTCCATTGAGGAGCGTGCAGACTTCATCAGGAGAAAATACGAGTTGCTGCAATTTATGGACTGTAATGAACAATTGTCCTGCCCCTTTATACCACATCAGAGCAGTTCCTCATGCCTTTCTCCTGTAGACAAGAAAAATTACAATAAACTAGCACACAAACATCGTATGGGGAGCACATTTCGTAACAGCCGGGTGAGAAAAGAACCTGATAATAATAACAAGGCTTCAAAGAAGAGCAACTCAATGGCAGGTATGGTGGAATTTGTTGGGTTGATAAAGGTTAATGTGGTCAAAGGCACTAATTTGGCCGTCCGTGATGTAATGACCAGTGATCCTTATGTCATTCTTTCTTTGGGTCACCAATCAGTAAAGACACGAGTTATAAAGAGCAATTTAAATCCTGTCTGGAATGAGAGCTTAATGTTGTCAATTCCACACAACATTCCTCCTCTTAAAGTGCATGTGTATGACAAAGATACATTCTCAACTGATGATTTCATGGGAGAGGCTGAAATAGACATCCAACCCTTACTTGCAGCCGCAAAAGCCTGCGAGAAATCTAGAGCCAACGAGTCCATGGAGTTCGAGAAGTGGATGGCAAGTTTGGACAACGCCCTTGTTAAAGATGGCTTCATCTCCCTCGAAGATGGGAAGATCAGACAAGAAATATCGGTAAAGCTGCAGAATGTGGAGAGAGGGGAGCTCGAAGTTGAGCTTGAGTGTCTTCCTCTCACTCAATAG 1311 0.4256 MTSEKRRKERQLGQLFLFLPVFVLHGNHYALICAIPQKLHAEDQGKMSLQQHNNVELKGVSAVGSGCCLYDLLCAESPNLQSQNNQWQSSSDPLERLGKLMHEAGNNYCADCGSPEPKWVSSNIGAFICIKCSGIHRSLGVHISKVLSLKLDQWTDDEVTALEELGGNALVNKKYEARIPSYIKKPKPTSSIEERADFIRRKYELLQFMDCNEQLSCPFIPHQSSSSCLSPVDKKNYNKLAHKHRMGSTFRNSRVRKEPDNNNKASKKSNSMAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILSLGHQSVKTRVIKSNLNPVWNESLMLSIPHNIPPLKVHVYDKDTFSTDDFMGEAEIDIQPLLAAAKACEKSRANESMEFEKWMASLDNALVKDGFISLEDGKIRQEISVKLQNVERGELEVELECLPLTQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1327 436 ProSiteProfiles C2 domain profile. 259 378 IPR000008 -
Alju02g1327 436 CDD C2_ArfGAP 279 423 - -
Alju02g1327 436 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 88 436 IPR044518 GO:0005096|GO:0005543
Alju02g1327 436 Pfam C2 domain 281 370 IPR000008 -
Alju02g1327 436 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 278 436 - -
Alju02g1327 436 CDD ArfGap 97 203 - -
Alju02g1327 436 Gene3D Arf GTPase activating protein 75 216 IPR038508 -
Alju02g1327 436 Gene3D C2 domain 279 436 IPR035892 -
Alju02g1327 436 ProSiteProfiles ARF GTPase-activating proteins domain profile. 91 216 IPR001164 GO:0005096
Alju02g1327 436 SUPERFAMILY ArfGap/RecO-like zinc finger 96 209 IPR037278 -
Alju02g1327 436 FunFam stromal membrane-associated protein 1 isoform X1 79 214 - -
Alju02g1327 436 MobiDBLite consensus disorder prediction 245 269 - -
Alju02g1327 436 Pfam Putative GTPase activating protein for Arf 97 209 IPR001164 GO:0005096
Alju02g1327 436 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 277 371 IPR035892 -
Alju02g1327 436 SMART C2_3c 281 376 IPR000008 -
Alju02g1327 436 PRINTS HIV Rev interacting protein signature 125 142 IPR001164 GO:0005096
Alju02g1327 436 PRINTS HIV Rev interacting protein signature 106 125 IPR001164 GO:0005096
Alju02g1327 436 PRINTS HIV Rev interacting protein signature 146 167 IPR001164 GO:0005096
Alju02g1327 436 SMART arf_gap_3 95 216 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1327 Alju-ChrAlju02 10930770 10936240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1327 96 436 C2H2 Transcription Factor Family AT4G21160 48.680 2.98e-117 344