Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1247 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATCGAAAATGCGAACAGCCGTCAAGTCACATTCTCCAAGAGGCGTAATGGATTGCTCAAGAAGGCTCAGGAACTGGCTATTCTTTGTGACGCCGAGGTTGCTGTGATCATTTTCTCTAATACAGGGAAGCTTTTCGAGTTTTCGAATTCTGGTATGATGCGAACACTGTCAAGATACAAAAAATGCTTTAATTCTTCAGAGGCTGTTGTGGTGGAATGCAAGACAGAGAAGGAAGATCCCAAGACAGTGGAGACTCTGAAAGATGAAATTGCAAAGCTAGAAAAGAAGCAGCTGCGATTGTTGGGTAAGGACCTGGCTGGGTTGAATTTAAAAGAATTGCATCAGCTTGAGCAGCAACTTAACGAAGCATTATTTTCTGTCAAGGAGAAGAAGGAGGAATTGCTTATGGAGCAACTGGAGCAATCGAGAGTACAGGAACAAAGGGTTATGTTGGAGAATGAAACTTTGCGCAGACAGGCAAGTTTCTTTTTTCCAAAATGTGAAGTCGAGGAGCTTCGCTGTTTGTTTCCAATAACTGAGCATGTAGTCCCATCTTTTCTTCAATACCACCATGTGAAAAGAAGGGACACCCCTGTAAATAATGGTATCATTTGTTCCAACTGGGTCAGTAACTGTGAAAATGAGAATGGAGATTCAGATACTACCTTGCATTTAGGGTTGCCCACTGATGTTCATCACAAGAGGAAGGCACCTGAGAAAGAAACATTCTCCAATGACTCTGAATCTCAAATGGCTCTTCTCTGA 795 0.4239 MGRGKIEIKRIENANSRQVTFSKRRNGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSNSGMMRTLSRYKKCFNSSEAVVVECKTEKEDPKTVETLKDEIAKLEKKQLRLLGKDLAGLNLKELHQLEQQLNEALFSVKEKKEELLMEQLEQSRVQEQRVMLENETLRRQASFFFPKCEVEELRCLFPITEHVVPSFLQYHHVKRRDTPVNNGIICSNWVSNCENENGDSDTTLHLGLPTDVHHKRKAPEKETFSNDSESQMALL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1247 264 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju02g1247 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju02g1247 264 Coils Coil 93 113 - -
Alju02g1247 264 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Alju02g1247 264 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju02g1247 264 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Alju02g1247 264 ProSiteProfiles K-box domain profile. 86 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju02g1247 264 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Alju02g1247 264 Pfam K-box region 91 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju02g1247 264 MobiDBLite consensus disorder prediction 239 264 - -
Alju02g1247 264 Coils Coil 123 143 - -
Alju02g1247 264 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Alju02g1247 264 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju02g1247 264 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju02g1247 264 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju02g1247 264 MobiDBLite consensus disorder prediction 239 253 - -
Alju02g1247 264 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Alju02g1247 264 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1247 Alju-ChrAlju02 10235658 10239117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1247 1 257 MADS-box Gene Family AT5G13790 52.713 3.97e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju02g1247 K-box 3.7e-17 No_clan