Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1204 ATGTCTCCAAAAATCCTTCTTCCCTCCATCCTCCTCATCATTTCTTTGATCTCATTACCCATTTGTTTTGGCTCTCACATACATCACAACTCTCTCAATGCTCCAAAGCATGAACACTTTGGCCTCATGAGAAGATCTCACAGAGCCAGTAAGGTTCCTTCAAGTTCTCAACAAGCAACAATTAGTGTTGATAACTATGGAGCCAAAGCCAGCGGAAACGATGACTCTGAGGCCTTCATGAAGGCTTGGAAAGAGGCTTGTTCTTCTGGGTCTACTCTTGTTGTCCCTGAGAATAAGGTCTATCATCTTAAGCCTGTGAAATTTTCAGGTCCGTGCCAGTCAAATACAGCTTTGATGGTGTATGGAACAATCATGGCGTGGTCTGACATGTCTGCGTATGAAGAAGATCGAAGGTTCTGGATTCAGTTCGTAGGAATCAAGAACTTCAAAGTTGATGGTGCAGGTAAAGGCACTATCGATGGCAATGGCAAGATATGGTGGCAACATTCCTGCAAAACCAACGCAAACCTCCCATGCAAGGATGCGCCAACTGCTGTAACTTTCAGCCAATGCAACAACTTGATGGTGCAAAACCTGAAATTCCAGAATCCACAGCAAATGCATATGAATTTTGATAAAAGCGTGAATGTTAGAGTTTCGAGTCTGATAGTGAAAGCCCCAGGAAACAGCCCTAATACTGATGGGATTCATGTGACAGCAACACAGAATATCTTCATAAGCAACAGTGTCATTGGCACAGGCGATGACTGCATTTCAATAGTAAGTGGGTCTAGCAATGTTAGAGCTACAGACATCACCTGTGGACCAGGACATGGAATCAGTATTGGGAGTTTAGGAGCAGATGATGAAGAAGCACAAGTGTCGAATGTGGTAGTGAACAGAGCAACATTGATAGGAACAATGAATGGGGTGAGAATTAAGACTTGGCAGGGAGGGTCTGGATATGCAAGAGGCATAAAGTTTATGAATATAGACATGAGAAATGTGAGCAACCCCATCATCATTGACCAAAACTACTGTGATAAACAAAAACAATGCCATCAACAGGGATCAGCGGTGCAACTGAGCGATGTGGTATATCAGAACATAAGAGGAACAAGTGCATCAGAAGTGGCCATCAAATTTGATTGCAGCCAAACAGAGCCTTGCAGAGACATCTACGTGGAAGATGTGTTCTTGAAAACACAAGGACGTGGAGAAACAGTTGCTTCTTGTGACAACGTTAGATTTGTCAACCAAGGAAACATCGTCCCCCAGTGTTCTTGA 1287 0.4343 MSPKILLPSILLIISLISLPICFGSHIHHNSLNAPKHEHFGLMRRSHRASKVPSSSQQATISVDNYGAKASGNDDSEAFMKAWKEACSSGSTLVVPENKVYHLKPVKFSGPCQSNTALMVYGTIMAWSDMSAYEEDRRFWIQFVGIKNFKVDGAGKGTIDGNGKIWWQHSCKTNANLPCKDAPTAVTFSQCNNLMVQNLKFQNPQQMHMNFDKSVNVRVSSLIVKAPGNSPNTDGIHVTATQNIFISNSVIGTGDDCISIVSGSSNVRATDITCGPGHGISIGSLGADDEEAQVSNVVVNRATLIGTMNGVRIKTWQGGSGYARGIKFMNIDMRNVSNPIIIDQNYCDKQKQCHQQGSAVQLSDVVYQNIRGTSASEVAIKFDCSQTEPCRDIYVEDVFLKTQGRGETVASCDNVRFVNQGNIVPQCS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1204 428 Pfam Glycosyl hydrolases family 28 91 416 IPR000743 GO:0004650|GO:0005975
Alju02g1204 428 ProSitePatterns Polygalacturonase active site. 271 284 IPR000743 GO:0004650|GO:0005975
Alju02g1204 428 PANTHER - 58 415 - -
Alju02g1204 428 FunFam Polygalacturonase QRT2 46 428 - -
Alju02g1204 428 SUPERFAMILY Pectin lyase-like 54 427 IPR011050 -
Alju02g1204 428 Gene3D - 44 425 IPR012334 -
Alju02g1204 428 SMART pbh1 294 315 IPR006626 -
Alju02g1204 428 SMART pbh1 214 240 IPR006626 -
Alju02g1204 428 SMART pbh1 323 344 IPR006626 -
Alju02g1204 428 SMART pbh1 241 262 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1204 Alju-ChrAlju02 9865254 9868066 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1204 1 428 Glycoside Hydrolase AT3G07970 53.139 2.39e-157 450
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g1907 10 36975322 36982305 Alju02g1204 02 9865254 9868066 CCT
Alju02g1204 02 9865254 9868066 Alju02g1204 02 9865254 9868066 ECH