Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1186 ATGGGAAGGGACAAGAACAATAGTAGCAGCAGTAGTAGTAAGAACAATGGCAACAACAATGTTGTGAAGCTAAGGAAGGGGTTGTGGTCGCCGGAGGAGGATGAGAAGCTGATAAGGTACATGTTGACCAATGGACAAGGTTGTTGGAGTGACATAGCCAGAAATGCCGGCCTTCTACGTTGTGGCAAGAGTTGTCGCCTTCGTTGGATTAATTATCTCAGACCTGACCTTAAGCGAGGTGCTTTCTCTCTCCAAGAAGAACAACTCATTCTTCATTTTCATTCCATTCTTGGCAATAGGTGGTCTCAGATAGCAGCACGTCTTCCAGGACGAACAGACAATGAGATTAAGAATTTTTGGAACTCAACCTTAAAGAAAAGGATGAAAAACAATACTGCTACTGCTACTACTTCCATTGCTACTCCTTCGCCAAACAACAGTACAGACTCTTCAACAAATCATATTATCCTCAATGGCATCACCACCACCTCCATGCCCTTCGTCAACATGACCATGTGCATGGACTCATCACCTTCATCAATATCATCATCTTCATCAGCATCCGTACAATCCATGCAAGCCGCCGCCACGGCTTTTGGTGGTGACCCCCAGTTAATGGAGTACCCCTTTTCCATGTTGAATAGTAATATTCCTTATGACATGCCTGCATGCTTGGCCCAAGTTGGCGGCGGCGGCGGCGGAATGGTGGAGGATGGGTTTTATGGTGGTGATTATAGTAATGGGGTGGAGTTGGAGGGAGAAGATGGTAAAATAATTGGGTTAGAAAGAGAGCTGTGTCTTCCTCCTTTGGACAGTAGAAGCATGGAAGAGAGGTATAATAGTAGCACTAGTGTTGGTCCTATTGATGTGAGAAGTCATATCAACAACAACAACAACAACTACCATTTTAATAATGGTTGCTTCAATAACACTGATCATCATCAGGACTTGGTTGGATATGGAAATAATAATCATGGGCAATCAGGGGAAAACTTAAGAATGGGAGAATGGGATTTGGAGGGTTTGATGCAAGATATATCCTCTTTTCCTTTCCTTGATTTCCAAGTTGAATGA 1074 0.4358 MGRDKNNSSSSSSKNNGNNNVVKLRKGLWSPEEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGAFSLQEEQLILHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRMKNNTATATTSIATPSPNNSTDSSTNHIILNGITTTSMPFVNMTMCMDSSPSSISSSSSASVQSMQAAATAFGGDPQLMEYPFSMLNSNIPYDMPACLAQVGGGGGGMVEDGFYGGDYSNGVELEGEDGKIIGLERELCLPPLDSRSMEERYNSSTSVGPIDVRSHINNNNNNYHFNNGCFNNTDHHQDLVGYGNNNHGQSGENLRMGEWDLEGLMQDISSFPFLDFQVE 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1186 357 CDD SANT 81 124 IPR001005 -
Alju02g1186 357 SMART sant 78 126 IPR001005 -
Alju02g1186 357 SMART sant 25 75 IPR001005 -
Alju02g1186 357 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Alju02g1186 357 CDD SANT 29 73 IPR001005 -
Alju02g1186 357 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Alju02g1186 357 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Alju02g1186 357 Pfam Myb-like DNA-binding domain 79 123 IPR001005 -
Alju02g1186 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 73 IPR017930 -
Alju02g1186 357 FunFam MYB transcription factor 23 79 - -
Alju02g1186 357 PANTHER MYB DOMAIN PROTEIN 55 19 309 - -
Alju02g1186 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Alju02g1186 357 Gene3D - 80 154 - -
Alju02g1186 357 Gene3D - 23 79 - -
Alju02g1186 357 MobiDBLite consensus disorder prediction 1 23 - -
Alju02g1186 357 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1186 Alju-ChrAlju02 9644828 9647872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1186 17 357 MYB Transcription Factor Family AT3G08500 47.339 2.67e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju02g1186 Myb_DNA-binding 8.6e-13 CL0123