Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1180 ATGACAGATCCTCAGTCTAATTTCTTCTCAAAGTGCTTCAACTTCGTCCCCCTCCATCCTCACTTTTACTCTCCCAATTCCTACAGCTCTTTCTCCATTCAATTCCCACCACCTCCTCCTCCTGTAAGAGAGGCCCTTCCTCTGCTGAACAATCTCAATCTCTTCACTAACAACTCCAACCAAACACCCACTCATGAACATGTACAACCCTCCACCAATAATAACAAGGAACCATTAATTCCACTCAACAAAGAGTCTAGTACCGATGAAACTGTCACTGTTGCTCTCCGCATAGGACTTCCCTCCATGACTTCTGCTACCACCACTAGCAGTAGCAGTAGTATTACTCAGATTGAAACGACAACCACCACCATCGACAAAGATGTCGTTTCTGGTGGTCACTACCCTTTTGATGCCTTGAACAAGGGCCAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCTGTCTGCTCCAAAACCTTCAACCGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAGTACAGGAAGGGACCAGATTCTCTAAGAGGAACACAACCTACGGCAATGCTAAGGCTTCCATGTTTCTGTTGTGCACCAAACTGCAAGCACAACATAGACCACCCAAGGGCAAGGCCTCTGAAGGATTTTAGAACCCTCCAAACTCATTACAAGAGGAAGCATGGCACCAAACCCTACTTGTGCAGAAAATGCAGCAAGGCTTTCGCCGTGAAAGGTGACTGGAGGACCCACGAGAAGAACTGTGGCAAAATATGGTATTGCCTATGTGGTTCTGACTTCAAACACAAGAGGTCACTTAAGGACCACGTTAGGGCTTTTGGCCATGGCCATGGTGGAGCTTTTCCTGGCGGCGCTGGCTTTGATGATAATTACTTGCAGCTGGAGGAAGAAGAAGAAGCTAATTCTGAGATTGAACATGATAATAATAATGGCGACAACTCTATGTGA 1002 0.4641 MTDPQSNFFSKCFNFVPLHPHFYSPNSYSSFSIQFPPPPPPVREALPLLNNLNLFTNNSNQTPTHEHVQPSTNNNKEPLIPLNKESSTDETVTVALRIGLPSMTSATTTSSSSSITQIETTTTTIDKDVVSGGHYPFDALNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPNCKHNIDHPRARPLKDFRTLQTHYKRKHGTKPYLCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHVRAFGHGHGGAFPGGAGFDDNYLQLEEEEEANSEIEHDNNNGDNSM 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1180 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Alju02g1180 333 SMART c2h2final6 270 293 IPR013087 -
Alju02g1180 333 SMART c2h2final6 160 182 IPR013087 -
Alju02g1180 333 SMART c2h2final6 244 264 IPR013087 -
Alju02g1180 333 SUPERFAMILY beta-beta-alpha zinc fingers 228 264 IPR036236 -
Alju02g1180 333 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Alju02g1180 333 PANTHER ZINC FINGER PROTEIN WIP2 22 327 IPR043584 GO:0003700|GO:0010468
Alju02g1180 333 FunFam zinc finger protein WIP2-like 159 182 - -
Alju02g1180 333 Gene3D Classic Zinc Finger 242 293 - -
Alju02g1180 333 MobiDBLite consensus disorder prediction 59 82 - -
Alju02g1180 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 300 IPR013087 -
Alju02g1180 333 Gene3D Classic Zinc Finger 159 182 - -
Alju02g1180 333 FunFam Zinc finger protein WIP2 213 295 - -
Alju02g1180 333 SUPERFAMILY beta-beta-alpha zinc fingers 153 182 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1180 Alju-ChrAlju02 9563499 9566275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1180 1 328 C2H2 Transcription Factor Family AT3G57670 51.414 2.66e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju02g1180 zf-C2H2_6 8.9e-05 CL0361