Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1179 ATGTCTAAGAGGGTTTGCAAGTTCTATGCCCGTGGAAAATGTTTCAGAGGGGAGCAATGTGATTATTCTCATGACGGCCATGATACACCTGTTGATGTCTGCAAATTCTATCAGAAGGGACACTGCTCCTATGGTAGCCAATGTAGATATAAACATGTCAAAGCTTCCCAGGCAAGTTCTGCATCATCTTCAGAAAATGGTTGGCAATCTCTGCCTTCAAAGTCTGTCATAGATTGTAATGCTAGAGGAAAATCAAGGTGGATCCCCAAGAATACTAATTTGGCAAGTACTGGTCATCTTAAGCATCTTAATTCTCTAAGGAATGATGATGTTGGTGAATCTAGTAATGCTGTACCTTCAAAGCATATCCTTTGTACATATGCGGCAGCCAACTGTCCCTTGGGTAAAAAATGCTTGCGCATTCATGGAGACCAGTGTCTGTATTGTAGAAAGTACTGCTTGCATCCTGCTGACCAAAGGGAGAGAGAGAATCATTTGAATTCTTGTGACAAAAAGGAAAAATACAATCAAGCATTAAAAGATAGTCAAGAAATAGAGTGCAATATTTGCTTGGATCGTGTTCTTTCAAAGCCTAAAGCATCTGAATGTAAGTTTGGGATGCTTCCTGAATGCGACCATGCTTTCTGTTTATCCTGTATCAGGAATTGGCGGAACAGTGCCTCAAACTCGGAAACGGACATCTTTAAAATCGCTAATAATAATACAGTGAGGACTTGCCCTGTGTGTCGTAAGCTATCGTATTTTGTGATTCCAACACCTATATGGTACTCCACAAAGGAAGAAAAGCAGGAATTAATTGACAACTACAAGGCAAATTGCAAGTTGATTGCTTGCAAGCATTTTGACTTTGGAAATGGGAACTGTCCATTTGGAGCTAGGTGTTTCTACAAGCATACTGTGAAGCCAGGCTCCGTGATGTGGAGACATGGTAGGCCGCCTCCACCACCTCGCCGCCGCAGAGCACAAAATAATATGGATATGTATGAAATGATAGATATGCTCAGTGAATTTGATTTACAAAGTGGTGAATTCTTTTCCATCATGCGGGACTGTGAGTTTTTTGATGATATGGATCCTTACGAGATGATGGCTGTATCAGATATGCTGGCTACTTCTGATTCAGGACCTAGGTTTTTTGATGACGAAGATTCTGATGATGAAGGAATGGGGTTTTTTGAGATGGCTGCTCTATCAGCGTCGCTGGATGACCCTGTTGAGGATTTCGACAATGATGAATTAAATCCTTCAGAAGCAGCATTCTTATCCATGTTAATGCAATCTAACATGGAAGAAGATAGTGAAGAGGACGAGGATGACTATATTTAG 1347 0.4105 MSKRVCKFYARGKCFRGEQCDYSHDGHDTPVDVCKFYQKGHCSYGSQCRYKHVKASQASSASSSENGWQSLPSKSVIDCNARGKSRWIPKNTNLASTGHLKHLNSLRNDDVGESSNAVPSKHILCTYAAANCPLGKKCLRIHGDQCLYCRKYCLHPADQRERENHLNSCDKKEKYNQALKDSQEIECNICLDRVLSKPKASECKFGMLPECDHAFCLSCIRNWRNSASNSETDIFKIANNNTVRTCPVCRKLSYFVIPTPIWYSTKEEKQELIDNYKANCKLIACKHFDFGNGNCPFGARCFYKHTVKPGSVMWRHGRPPPPPRRRRAQNNMDMYEMIDMLSEFDLQSGEFFSIMRDCEFFDDMDPYEMMAVSDMLATSDSGPRFFDDEDSDDEGMGFFEMAALSASLDDPVEDFDNDELNPSEAAFLSMLMQSNMEEDSEEDEDDYI 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1179 448 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Alju02g1179 448 ProSiteProfiles Zinc finger RING-type profile. 187 250 IPR001841 -
Alju02g1179 448 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Alju02g1179 448 Gene3D - 31 90 - -
Alju02g1179 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 281 IPR013083 -
Alju02g1179 448 SUPERFAMILY RING/U-box 177 257 - -
Alju02g1179 448 Pfam Zinc finger, C3HC4 type (RING finger) 187 249 IPR018957 GO:0046872
Alju02g1179 448 ProSiteProfiles Zinc finger C3H1-type profile. 279 308 IPR000571 GO:0046872
Alju02g1179 448 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Alju02g1179 448 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 53 IPR000571 GO:0046872
Alju02g1179 448 ProSiteProfiles Zinc finger C3H1-type profile. 119 145 IPR000571 GO:0046872
Alju02g1179 448 CDD RING-HC_MKRN 185 250 - -
Alju02g1179 448 Gene3D - 1 30 - -
Alju02g1179 448 PANTHER MAKORIN-RELATED 1 330 IPR045072 GO:0000209|GO:0061630
Alju02g1179 448 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Alju02g1179 448 SMART ring_2 187 249 IPR001841 -
Alju02g1179 448 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Alju02g1179 448 SMART c3hfinal6 119 144 IPR000571 GO:0046872
Alju02g1179 448 SMART c3hfinal6 279 307 IPR000571 GO:0046872
Alju02g1179 448 SMART c3hfinal6 1 26 IPR000571 GO:0046872
Alju02g1179 448 SUPERFAMILY CCCH zinc finger 28 52 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1179 Alju-ChrAlju02 9555968 9559268 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju02g1179 zf-C3HC4 6.2e-07 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g1179 02 9555968 9559268 Alju02g1179 02 9555968 9559268 ECH