Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1177 ATGTCTAAGAGGGTTCTTTGCAAATTCTTTGCCCATGGAGCATGTTTGAAGGGGGAGCACTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAACAATATATGCACGTTTTATCAGAAAGGAGTATGTGCCTATGGTAGTCGCTGCAGATATGACCATGTCAAAGCTTCCCGTGAACAGTCCTATGATCCATCTTCTTCTGCAAGTTTACACCCCCTAAATTCAGATTCTTCTATACTTGGTAGTACTAGAGTTACATCAAATGGGGCTGCTACAATTACTGAGTTGTCTTCTCATAGTGGACCTTCCTTTCCTATTATTCCTGCATGGAATGCAGAATCTGAGTTTCATGTCCCTGATTGTTTTAATGCTTGGAATCCAGAACCTGGGTATCAGGATTTTTTAGAGGATAGTGGTGTCAGTGAATCCAGAATTACTGATCCTTCTGAGCGTCCTATCTGTTCATTTGCTGCTGCTGGTAATTGCCCCAGGAAGGAGAAATGCCCTTTTATTCATGGAGATTTGTGTCCTATCTGTGTAAAGCAATGCTTACATCCTTTTCGACCTGAAGAAAGAGAGGAACATATGATTACTTGCCAAAAAATGCAAAAGCATCTTGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTTGAGCGTGTACTTTCAAAGCCCTCAGCAGCTGAACGCAAGTTTGGGTTGCTATCTGAATGTGATCATCCCTTCTGCATATCTTGTATTAGGAATTGGCGTAGTAGTAACCCAACCTTGGGAATGGATGTGAATACCACATTGAGGGCCTGTCCAATCTGCCGCAAGCTCTCTTACTTTGTGATTCCAAGTGTCATTTGGTACTCTACAACAGAAGAAAAAAATGAAATCATCGACAGCTACAAGGAAAAGCTCAAGTCAATTGATTGCAAGCATTTTGACTTTGGGAGTGGAAACTGCCCTTTTGGTACTAGCTGTTTCTACAAGCATGCTTACCGAGATGGCAGACTTGAGCAAGTAGTTCTGAGGCATCTTGGGGCTGCAGATGGCAACACTGTGATTGCTAAAGACATCAGGCTATCAGATTTCCTTTCTAATATGCATTTAAGATGA 1113 0.4187 MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASREQSYDPSSSASLHPLNSDSSILGSTRVTSNGAATITELSSHSGPSFPIIPAWNAESEFHVPDCFNAWNPEPGYQDFLEDSGVSESRITDPSERPICSFAAAGNCPRKEKCPFIHGDLCPICVKQCLHPFRPEEREEHMITCQKMQKHLEALKRSQEIECSVCLERVLSKPSAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNTTLRACPICRKLSYFVIPSVIWYSTTEEKNEIIDSYKEKLKSIDCKHFDFGSGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGNTVIAKDIRLSDFLSNMHLR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1177 370 ProSiteProfiles Zinc finger C3H1-type profile. 148 175 IPR000571 GO:0046872
Alju02g1177 370 CDD RING-HC_MKRN 215 275 - -
Alju02g1177 370 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Alju02g1177 370 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Alju02g1177 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 281 IPR013083 -
Alju02g1177 370 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Alju02g1177 370 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Alju02g1177 370 Pfam RNA-binding, Nab2-type zinc finger 153 173 - -
Alju02g1177 370 Pfam RNA-binding, Nab2-type zinc finger 309 331 - -
Alju02g1177 370 Gene3D - 1 32 - -
Alju02g1177 370 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Alju02g1177 370 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Alju02g1177 370 SMART c3hfinal6 304 332 IPR000571 GO:0046872
Alju02g1177 370 SMART c3hfinal6 149 174 IPR000571 GO:0046872
Alju02g1177 370 ProSitePatterns Zinc finger RING-type signature. 241 250 IPR017907 -
Alju02g1177 370 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Alju02g1177 370 SUPERFAMILY RING/U-box 205 281 - -
Alju02g1177 370 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Alju02g1177 370 ProSiteProfiles Zinc finger RING-type profile. 217 275 IPR001841 -
Alju02g1177 370 ProSiteProfiles Zinc finger C3H1-type profile. 304 333 IPR000571 GO:0046872
Alju02g1177 370 SMART ring_2 217 274 IPR001841 -
Alju02g1177 370 Gene3D - 33 176 - -
Alju02g1177 370 PANTHER MAKORIN-RELATED 5 353 IPR045072 GO:0000209|GO:0061630
Alju02g1177 370 Pfam Zinc finger, C3HC4 type (RING finger) 217 274 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1177 Alju-ChrAlju02 9549191 9552208 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju02g1177 zf-C3HC4 4.7e-07 CL0229