Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1170 ATGAGTGCTTTCTATAGTCCTGCTCTCAAATACTCAGGAAACTACTCAGAAATGGATCCTAGAAACATCCAACAACAACAACAACGTCGTTATCATCATCATCAGCCGCAGCAGCAGCAGCAGCAAATTTCTGGGCTTTTGAGGCATCGCTCTGCTCCAAGCTCATTGCTGGCAAACCTGGTGGAAAGAGAAGGAGGTTGCAGAGGCATGGATCATCAACAACAACATGAGAGAAGATGTTATGTTCAATCCCTTGATGCAGAAATGGAAGGCATGTTAGATTCGAGCAATGGATGGAGCAACGTGAAGCATGAAGGAGGAGGGGGAGGTTCTGTTTTCTTGAATGAGGCTAATCAGCTGAATTATGATTCTCATGAAGGGTCCCAAGAATTTGGAGTAGGTGGGTCATGTTCAAGTGCGATGATGAACACTGTTATGGGTTTTCAGAACTCCACTCAATCCAAAATGGCTTCTGGGAATTGTTCCAATAATCTTCTACTCAGGCAGAAGACCTCACCTCCTGGGTTTTTCTCCAATTTCTCTCTCACAAATGCAACCTTCTCATCTGAGCCATCTTCCTCTTGCCCAAGAAGGATGCCACAGATTGCAGAAAATGTAAATGAAACCCTAGAAGAAGGAGCAAGAACCAGTGTTGAAACTAGAAGCCTGAGAAATGATAATGGAAGGCACAACAAAAGTTATATGCCCAGTTTCACAAGTGACTTCTGGGAAAGTTATTCATTCTCTGCTCATAAAACAGCAAGTGACAGCAATGAATTCATGTTTTCTACTTCAGATGCCTCCGAATCTCAGCAAGCAGATCAGTTTGGATATCAGAATGTTGGCTTAACTCATCAAATGAGTTTGCCTATTAGTTCATCAACAAAGAAAGATGGCAGAGAGATGATTTTGCATATTCAAGGATCTGTTCCCTGTAAAATTAGAGCCAAAAGAGGCTTTGCTACTCATCCAAGAAGCATTGCAGAGAGGATAAGAAGAACAAGGATTAGTGAAAGAATAAAGAAGCTGCAAGAGCTTTTCCCACAATCAGACAAGCAAACAAACACAGCAGATATGTTGGATTTGGCGGTTGATTATATTAAAGACCTGCGAAAACAAGTCAAGATACTAACAGATACAAGGGCAAGGTGCATATGCTCAGGTGTTCAAAGGCAATAA 1179 0.419 MSAFYSPALKYSGNYSEMDPRNIQQQQQRRYHHHQPQQQQQQISGLLRHRSAPSSLLANLVEREGGCRGMDHQQQHERRCYVQSLDAEMEGMLDSSNGWSNVKHEGGGGGSVFLNEANQLNYDSHEGSQEFGVGGSCSSAMMNTVMGFQNSTQSKMASGNCSNNLLLRQKTSPPGFFSNFSLTNATFSSEPSSSCPRRMPQIAENVNETLEEGARTSVETRSLRNDNGRHNKSYMPSFTSDFWESYSFSAHKTASDSNEFMFSTSDASESQQADQFGYQNVGLTHQMSLPISSSTKKDGREMILHIQGSVPCKIRAKRGFATHPRSIAERIRRTRISERIKKLQELFPQSDKQTNTADMLDLAVDYIKDLRKQVKILTDTRARCICSGVQRQ 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1170 392 Pfam Helix-loop-helix DNA-binding domain 326 370 IPR011598 GO:0046983
Alju02g1170 392 Gene3D - 322 386 IPR036638 GO:0046983
Alju02g1170 392 MobiDBLite consensus disorder prediction 210 229 - -
Alju02g1170 392 MobiDBLite consensus disorder prediction 214 228 - -
Alju02g1170 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 370 IPR011598 GO:0046983
Alju02g1170 392 SMART finulus 326 376 IPR011598 GO:0046983
Alju02g1170 392 CDD bHLH_AtbHLH_like 325 377 IPR045239 -
Alju02g1170 392 MobiDBLite consensus disorder prediction 1 46 - -
Alju02g1170 392 MobiDBLite consensus disorder prediction 17 46 - -
Alju02g1170 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 380 IPR036638 GO:0046983
Alju02g1170 392 FunFam Transcription factor bHLH130 family 321 390 - -
Alju02g1170 392 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 50 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1170 Alju-ChrAlju02 9497474 9500005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1170 44 376 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 35.429 1.10e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju02g1170 HLH 6.1e-10 No_clan