Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1169 ATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAGAAAAATGAAAAATTAGAGGATTCTAAACCTATTAAAGTTGTCTCAGGGTCTTTGACTCCTAATCTTTCCATTAATAAAAGGACCTCTGCAGACTTGAAGGCTAATAATGCACAGAAAACATCCCAGGCTGGTTCCAGTGGCAAACTTGCATTCAGTATAAAACAAAAGTCAAGGCTGGTGCCTCCACCTGTTAAGTTAAGTGCAGATGAAGAAGAAGAAGCAGATGGTAGTAATGTTTCAAGTGATGCACCCCTAAAACGACAAAAGTTGGGGCGTGAAGATGGCATTGACCGATCATCAAGACAATCTGATGATGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGAGAAACTAGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTCACACGTCAAAAAAATCCAGGGAATACACCTTTCAAGTTTTTATTTGACGAGAAATGTGCCGACTACAAATATTATGAATATCTACTAGCCCAGGAGGAAAAGGCTCTAGCGCAGCCCCAGGAATCACAGACATCACATAATGGGGGTACTAGCTCCTCATCTTCTAGACCAACCAATGTTCCTCGGAGACCATCTCAGCAGCATTCAGCTTACCAAATTCCTGCATCTGCTCTGTATGAAAGTTCTGAAGATCCTGGAGCTTATGGATCTTCAGGTCAAGCAGCCCCAGGAGGAAGCAATAATGAAGCTGGTGGATCATCGAATGCTGATTCTTTAGCATTGATGGAGTTCTACATGAAGAAGGCTGCACAGGAAGAGAAGATGAAAAGACCTAAGCAATCTAAAGATGAGATGCCCCCTCCTGCATGTCTTCAAGCTTCTTCTAAAAAAGGTCATCATATGGGTGATTACATTCCCCAGGAAGAACTAGAGAAGTTCATGGCTACCTGTAATGATGCAGAAGCACAGAAAGCTGCCAAGGAGGCTGCAGAGAAGGCTAAAATACAGGCTGATAATGTGGGTCACAAGCTTTTGTCAAAAATGGGATGGAAAGAAGGTGAGGGTCTGGGCAGCTCCAGGAAAGGTATTTCAGATCCAATCATGGCTGGTAATGTTAAGATGAACAACTTGGGGGTTGGTGCAAACAACCCTGGGGAGGTGACTGCTGAAGACGACATATACGAGCAATACAAAAAGAGGATGATGCTTGGTTATCGTTACAGACCCAATCCTCTGAACAATCCTCGCAAGGCTTATTACTGA 1269 0.435 MERFKQLQQEQEKKNEKLEDSKPIKVVSGSLTPNLSINKRTSADLKANNAQKTSQAGSSGKLAFSIKQKSRLVPPPVKLSADEEEEADGSNVSSDAPLKRQKLGREDGIDRSSRQSDDAPPSPSDPTVKKVAEKLASFVAKNGRQFEDVTRQKNPGNTPFKFLFDEKCADYKYYEYLLAQEEKALAQPQESQTSHNGGTSSSSSRPTNVPRRPSQQHSAYQIPASALYESSEDPGAYGSSGQAAPGGSNNEAGGSSNADSLALMEFYMKKAAQEEKMKRPKQSKDEMPPPACLQASSKKGHHMGDYIPQEELEKFMATCNDAEAQKAAKEAAEKAKIQADNVGHKLLSKMGWKEGEGLGSSRKGISDPIMAGNVKMNNLGVGANNPGEVTAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1169 422 ProSiteProfiles SURP motif repeat profile. 131 174 IPR000061 GO:0003723|GO:0006396
Alju02g1169 422 MobiDBLite consensus disorder prediction 99 114 - -
Alju02g1169 422 MobiDBLite consensus disorder prediction 185 225 - -
Alju02g1169 422 Coils Coil 1 21 - -
Alju02g1169 422 MobiDBLite consensus disorder prediction 184 258 - -
Alju02g1169 422 SMART G-patch_5 337 384 IPR000467 GO:0003676
Alju02g1169 422 ProSiteProfiles G-patch domain profile. 339 386 IPR000467 GO:0003676
Alju02g1169 422 Pfam G-patch domain 340 383 IPR000467 GO:0003676
Alju02g1169 422 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 296 422 IPR040169 -
Alju02g1169 422 MobiDBLite consensus disorder prediction 271 301 - -
Alju02g1169 422 MobiDBLite consensus disorder prediction 242 257 - -
Alju02g1169 422 Coils Coil 312 332 - -
Alju02g1169 422 MobiDBLite consensus disorder prediction 1 129 - -
Alju02g1169 422 Pfam Surp module 131 180 IPR000061 GO:0003723|GO:0006396
Alju02g1169 422 Gene3D Surp module 112 186 IPR035967 GO:0003723|GO:0006396
Alju02g1169 422 SMART surpneu2 129 183 IPR000061 GO:0003723|GO:0006396
Alju02g1169 422 MobiDBLite consensus disorder prediction 1 23 - -
Alju02g1169 422 MobiDBLite consensus disorder prediction 27 65 - -
Alju02g1169 422 SUPERFAMILY Surp module (SWAP domain) 119 184 IPR035967 GO:0003723|GO:0006396
Alju02g1169 422 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1169 Alju-ChrAlju02 9483215 9487064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1169 328 395 C2H2 Transcription Factor Family AT5G26610 42.029 4.19e-09 55.8