Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1125 ATGATCATGAGACTCTCATCAATAATTATAAAGACCCTTTTCAATGACGCCTTCTCACTCCAAAACTTCATTTCCTCTCTCTCCCTCCCTCCACCTTCTTCATCTTCTTTTTCTTCTCTATTTATATCTCTTTTCTCTCTGTATTATTGTTTATGCAGAGAGATGGAGCTTGGTTTGAGCTTGGGAGATCATGCTTCAAAGCCTTCTGAAGCTTCCAGCCTTCTGGGATTAGGCTTCACCACTTTATCCATTGGTCCTTTCAGTACCAAAGCATCAGATCAACAAGAACAAGAACCAGAGGAAAAAGAAGCAAAAAGGCAAAAGGGAAAGCAGAATATTGAAGAAAACGAAGACAGACTTGAATATGTTCAGCTCGATCTTCTCCCTCACACTCCAGTCGCTGTTTCTCGCACTAACCCTCCTTCTCAAATCTCATTTCCATGGCCTCCGTCTGAAAATGGAAGTTCTCCTAGGGGCGTGGATATGAATAGATTGCCACTGCAGGCGGCGGCGGCGGCGGAGGAAGATGAGGCGGCGATGTCGTCGTCTCCGAACAGCGCTGCGTCGTCGTTTCAGATGGATCTCAGTGTGTTTAACAGAGGAGGGAGTAGTATTAGTGGCTGTAAGAGGGATTATGAAGGAGAGGTATATTATGATCAAAGGGCTGGTTCTTCAAGAGCAAGCGATGAAGATGACAACGTTGGTAGTACGAGGAAGAAGCTAAGGCTGTCCAAGGAACAATCAGCTTTTCTAGAAGAGAGCTTCAAAGAACACAGCACCCTTAACCCAAAACAGAAACTTGCTCTTGCAAAACAGCTCAATCTTCGCCCTCGCCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCGAGGACGAAGTTGAAGCAGACAGAGGTAGACTGTGAGTACTTAAAGAGGTGCTGTGAGACATTAACGGAAGAGAATAGAAGACTTCACAAAGAGCTTCAAGAATTGAGAGCTTTGAAGACTAATTCAAACCCATTCTTCATGCAATTACCAGCCACCACCTTGACCATGTGTCCTTCTTGTGAGCGAGTCGCCACCAACAATTCCACAACCACCGTCACCACCGCAGCCACCACTACGGTTGCTGCAGCTTCCTCTGCAAGTCCTTCTGCAACCAAAGTCACTGAAACAGGAGCCGCCATTGAATCCAAAGCCATTGGATTCCCTCTAACCAAACCAAAGTTCTATCCTTTTGCTCACACCAAAACCCACCACCACCATCCATCCACTCCCTCTTGA 1263 0.46 MIMRLSSIIIKTLFNDAFSLQNFISSLSLPPPSSSSFSSLFISLFSLYYCLCREMELGLSLGDHASKPSEASSLLGLGFTTLSIGPFSTKASDQQEQEPEEKEAKRQKGKQNIEENEDRLEYVQLDLLPHTPVAVSRTNPPSQISFPWPPSENGSSPRGVDMNRLPLQAAAAAEEDEAAMSSSPNSAASSFQMDLSVFNRGGSSISGCKRDYEGEVYYDQRAGSSRASDEDDNVGSTRKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTNSNPFFMQLPATTLTMCPSCERVATNNSTTTVTTAATTTVAAASSASPSATKVTETGAAIESKAIGFPLTKPKFYPFAHTKTHHHHPSTPS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1125 420 Pfam HD-ZIP protein N terminus 151 191 IPR006712 GO:0005634
Alju02g1125 420 Coils Coil 307 330 - -
Alju02g1125 420 ProSitePatterns 'Homeobox' domain signature. 269 292 IPR017970 GO:0000981|GO:0006355
Alju02g1125 420 MobiDBLite consensus disorder prediction 94 116 - -
Alju02g1125 420 Pfam Homeodomain 238 292 IPR001356 GO:0003677
Alju02g1125 420 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 98 374 - -
Alju02g1125 420 SMART HOX_1 236 298 IPR001356 GO:0003677
Alju02g1125 420 Pfam Homeobox associated leucine zipper 294 328 IPR003106 GO:0006355|GO:0043565
Alju02g1125 420 SUPERFAMILY Homeodomain-like 224 295 IPR009057 -
Alju02g1125 420 MobiDBLite consensus disorder prediction 220 241 - -
Alju02g1125 420 MobiDBLite consensus disorder prediction 135 158 - -
Alju02g1125 420 Gene3D - 242 292 - -
Alju02g1125 420 MobiDBLite consensus disorder prediction 133 162 - -
Alju02g1125 420 CDD homeodomain 238 295 IPR001356 GO:0003677
Alju02g1125 420 SMART halz 294 338 IPR003106 GO:0006355|GO:0043565
Alju02g1125 420 ProSiteProfiles 'Homeobox' domain profile. 234 294 IPR001356 GO:0003677
Alju02g1125 420 MobiDBLite consensus disorder prediction 89 116 - -
Alju02g1125 420 MobiDBLite consensus disorder prediction 224 241 - -
Alju02g1125 420 FunFam Homeobox-leucine zipper protein 18 223 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1125 Alju-ChrAlju02 9143028 9144593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1125 151 383 Homeobox Transcription Factor Family AT2G44910 55.508 6.69e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju02g1125 Homeodomain 2.2e-15 CL0123