Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1111 ATGAAGGCAATCTTTTATGTCCACGGAGGAATCAATGCACCGGTTTTTGGTCAGATCCCTGGGGCGAATCCTGCAATTCCTGGAATGTTTCAAAATATGTTTCCAATTGCTACCAATCAGATGCAGCCATTCAGTGCCCTCCCCGTCATGCCAGTCCAGGCTATGACCCAGCAGGCTACTCGACATGCCAGGCGGGTTTATGTTGGAGGACTCCCTCCTACGGCCAATGAACAGTCTGTTGCAACTTTCTTTAGTCAGGTCATGGCTAAGATCGGAGGAAATACTGCTGGTCCAGGTGATGCTGTTGTTAATGTCTATATTAACCATGACAAGAAATTTGCTTTTGTTGAAATGAGATCTGTTGAGGAAGCTAGCAACGCAATGGCTCTAGATGGGATTATTTTTGAGGGTGCACCTGTCAAAGTAAGGAGGCCTACTGATTATAACCCTTCCCTAGCCGCAACCCTTGGCCCTAGCCAGCCTAATCCGAACCTGAATCTGGGTGCTGTGGGCCTAACACCTGGCTCTGCTGGTGGACTTGATGGTCCTGATCGTATATTTGTGGGCGGTCTTCCTTATTACTTCACAGAAACACAGATCCGGGAGCTTTTAGAGACTTTTGGTCCCCTTCGGGGCTTTGATTTGGTGAAAGATAGGGAAACAGGAAACTCAAAGGGTTATGCATTCTGTGTTTATCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTGAATGGAATAAAAATGGGAGATAAGACTCTTACAGTTAGACGAGCCAATCAAGGTGCAAACCAGCCAAAACCTGAGCAAGAAAGCATATTAATGCATGCACAGCAGCAAATTGCCATACAGAAACTCATGCTTCAGCCAGCATTGGTGGCAACAAAGGTTGTTTGTTTAACTAATGCCATATCTGCTGATGAGCTTAAAGATGATGAGGACTATGAAGAGATTGTTGATGATATGAGAACAGAGTGCGCAAAATTTGGCACCTTGGTTAATGTTGCGATACCTCGCCCCCAACTGAATGGGGAGCCAGCACCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCTGATGTTGATGGTGCAACAAAAGCACGAGCTGGCTTGAACGGACGAAAATTCGGTGGCAATCAAGTAGTGGCTGTCTTTTATCCGGAGAATAAATTTGCTCAGGGAGATTATGAAGGATAG 1197 0.4578 MKAIFYVHGGINAPVFGQIPGANPAIPGMFQNMFPIATNQMQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESILMHAQQQIAIQKLMLQPALVATKVVCLTNAISADELKDDEDYEEIVDDMRTECAKFGTLVNVAIPRPQLNGEPAPGVGKVFLEYADVDGATKARAGLNGRKFGGNQVVAVFYPENKFAQGDYEG 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1111 398 CDD RRM2_U2AF65 184 260 - -
Alju02g1111 398 CDD RRM3_U2AF65 296 384 - -
Alju02g1111 398 FunFam U2 snRNP auxiliary factor large subunit 59 160 - -
Alju02g1111 398 SUPERFAMILY RNA-binding domain, RBD 185 388 IPR035979 GO:0003676
Alju02g1111 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 147 IPR000504 GO:0003723
Alju02g1111 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 255 IPR000504 GO:0003723
Alju02g1111 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 381 IPR000504 GO:0003723
Alju02g1111 398 FunFam U2 snRNP auxiliary factor large subunit 292 397 - -
Alju02g1111 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 262 IPR000504 GO:0003723
Alju02g1111 398 Gene3D - 159 274 IPR012677 -
Alju02g1111 398 SMART rrm2_1 298 384 IPR003954 GO:0003676
Alju02g1111 398 SMART rrm2_1 65 143 IPR003954 GO:0003676
Alju02g1111 398 Gene3D - 292 397 IPR012677 -
Alju02g1111 398 Gene3D - 59 158 IPR012677 -
Alju02g1111 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 389 IPR000504 GO:0003723
Alju02g1111 398 PANTHER RNA-BINDING PROTEIN 20 396 - -
Alju02g1111 398 SUPERFAMILY RNA-binding domain, RBD 47 150 IPR035979 GO:0003676
Alju02g1111 398 SMART rrm1_1 65 143 IPR000504 GO:0003723
Alju02g1111 398 SMART rrm1_1 298 385 IPR000504 GO:0003723
Alju02g1111 398 SMART rrm1_1 185 258 IPR000504 GO:0003723
Alju02g1111 398 FunFam U2 snRNP auxiliary factor large subunit 161 274 - -
Alju02g1111 398 CDD RRM1_U2AF65 63 145 - -
Alju02g1111 398 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 14 396 IPR006529 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1111 Alju-ChrAlju02 9049920 9053293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1111 186 377 Eukaryotic Initiation Factors Gene Family AT1G22760 26.289 2.44e-07 50.8