Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1107 ATGGCCCAGCAGTCATCTAGACTTCAGCGCTTGCTTACTCTCTTGGACACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGCCAAATTGGGGACATTGCAAAATCTCATCCTCAGGACTTGATCAGTCTGCTAAAGAAAGTATCTCAATATCTACATAGTAAAACTTGGGATACAAGAGTTGCAGCTGCCCATGCAATCGGGGCTATTGCTGAGAATGTGAAGCACACAAGTTTGAGTGAACTTATTGCTACTGTTGCAACAAAATTGTCTGAAGCTGGGATATCTGGTAGTGTTGAAGATATATGTGCATGGCCTTACTTACAATCTAGAATTACGGGAAGTGCATTTAGGAGCTTTGACCTCAACAAGGTTCTTGAATTTGGCGCGTTATTAGCATCTGGAGGACAGGAGTATGATATAGGAAGTGATAATGTAAAGAACCCAAAGGAGCGATTGGCTCGCCAGAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTGTGCGAACAATTCATGGATATCAGTGATGTGATAAGAGATGAAGATCTTATGGCATTTAAATCAGATATACATCCATATGGAATCGATCATAGAGTTTTTACATCTCGTTCTGTACATAACATCCAGAAAATGGTTGCCAATATGGTTCCTAGCGTTAAATCTAAGTGGCCAAGTGCAAGAGAACGAAATCTCTTGAAACGTAAAGCAAAAATGAACTCAAAAGACCAAACAAAAGGCTGGTGTGAGGATGGAAGTGCAGAGGCATCACTTGCTCAAAATGCAACTTCTGGAGGCACATATCCTGATTCAGTAAATTGCAATAAGGCTTTCATTTATGGTAATCATGATGAAGATGGATTTGATCATGATGGAGATGGGCGATGGCCTTTCCACATTTTTGTTGAGCAGCTTATTATTGATATGTTTGATCCTGTTTGGGAGGTACGCCATGGCAGTGTGATGGCTTTGAGGGAGATTTTAACACATCAAGGTGCATCTGCTGGCGTATTAAAACCGGACTCACGCTTGGGTGGAGAACTAGTTCTTGAATTGGAGGATAGAAATGTTTCGAATGTATTAAAGAGAGACAGGGAGATAGATTTGAATATGCAAATTTCAGTGGATGAGTTTGAGTCAAACTTTAAGAGGCCTAAGCTTGAAGATGTATCATCCACTTCCATGGATGGGAGGACCATATGCAGCAATGGGGGTGATATTGAAATCAGCATTGGTACTGAAACTCTTGGATGCGGTTTACCCATGGATGACAGAAATGGACAAGTTAATGATAGTTCTGTGGGCTTGGATCTCAAATCTTATTCTGAGGGTTTATGTCATTCATGCAAGGAACCAGCTAATATAGCTGAGCAGAAGGATTATTCTGGTGAGGATAAGATTCCATCTGGCAATCTTAATGAGCTTCCTCAGAATTGTGAGCTTGTGAACTTGCTTAATGTGACTAAAAGTTCGTGGCTTCAAAACTACGGATTTCTTCAAGATTGTGTAATGCGCTTCTTGTGTGTGTTGTCACTAGATCGCTTTGGTGATTATGTCTCAGATCAGGTTGTTGCTCCTGTACGGGAAACCTGCGCACAAGCATTAGGTGCTTCATTCAAGTACATGCGTCCAGCATTAGTAAATGAAACATTAAATATATTGTTGAAAATGCAGTGTAGAGCAGAATGGGAGATTCGTCATGGCAGCCTTTTAGGGATCAAATATTTAGTTGCTGTGCGGCAGGAAATGCTTCCAGAATTGCTTGGGCGTGTTCTTCCTGCATGCAAATTTGGGTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCAGCTGCAATTGTTGCTTTACCGGGTCAAACTTTGCACTTGATTGTGATGCTATTGTGGGACATTTTACTTGATTTGGATGACTTAAGCCCATCCACTAGCAGTGTAATGAATCTTCTGGCAGAAATTTATTCTCAGGATGAGATGGTTCCAAAGATGAACCAAGCAATTGATTTGGGAGATACAGAAATGGTTACTCTAATTGGAGTTGGTGGCAGTGGTGATAGTGATCATGACAAAAATCCTTATATGCTTTCGATGTTGGCACCACGCTTATGGCCTTTTATGAGGCATAGCATCACTTCTGTTCGGTTTTCAGCAATTCGCACTTTGGAGCGGCTGCTTGAAGCTGGATACAAGAGAAGCATGTCTGAGCAATGCTGTTCTTCATTTTGGCCTTCTTTTATCCTAGGAGATACCCTTCGAATTGTATTTCAGAATCTGCTATTGGAATCAAATGAGGCTATATTGCAGTGTTCTGAGAGAGTTTGGAGGCTTCTTGTTCAGTGTCCAGTGGAGGATTTGGAGATGGCTGCTAGATCTTATATGAATTCCTGGATAGAACTTGCATCTACCCCATTCGGTTCAGCATTAGACACCTCAAAAATGTTTTGGCCTGTTACCTTCCCGCAAAAAAGTCAATCTAGAGCAGCAGCTAAAATGAGAGCTGTGAAGATTGAAAATGAATATGGTGGAGATCTTGGCTCAGATTCTACTAAAGGAATAAATCTACAAGAAAGAAATGGAGATGTTTCCATGGGTTCTGTCAAGATTGTTGTTGGTGCGGACGTTGATACATCAGTAACTAATACTAGAGTGATAACTGCTACTGCATTGGGAATTTTTGCTTCTAAGCTGCCAGAGGATTCTATTAAAGATGTGATTGACCCACTGTGGAATGCTCTGACGTCTTTGTCCGGTGTCCAGCGCCAGGTTGCATCCTTGGTATTTATTTCTTGGTTCAAGGAGATTAAACGAAGTCAAATATCTGAAAACCTTAAGATTATTCCTGGTGTCCCTAATTATGTCAAAGACTGGCTGCTGGATTTATTGGCATGTTCTGATTCGGCATTCCCGACCAAGGATTCATGTCTTCCTTATGCTGAGCTTTCAAGAACATATTCAAAGATGCGTAGTGAGGCTGGTCAATTGCTTAATGCTATGAAATGTTCGGGTATTTTTGATGACTTATTGTCAACTATGAAAGTTGAGTTGGAAAGCATGAGTGTGGATGATGCCATTAATTTTGCTTCGAAAGTTCCGGCTTTGTCTAGTGAAAGTTCTGGGAATGAGTTCTCAGGAAGAAACATTATGGACGATATTGAGTCATCAAAACAGAGACTCTTGACAACTTCTGGCTATTTAAAATGTGTCCAGAGCAATTTGCATGTTACGGTTACATCTGCTGTTGCGGCTGCAGTTGTTTGGATGTCAGAATTTCCTTCACGCCTCACCCCAATTATTTTGCCGTTGATGGCTTCAATTAAACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAGGCACTGGCTGAGCTTATGTATCACTCTGTTGAACGTAGACCTTGCCCAAATGATAAGTTAATTAAGAATATTTGTGGCTTGACTTGTATGGATCCCTCTGAGACACCTCAAGCTGAATTTATTAGATCCATGGACAGTATTGATGACCAAGGTCTCATGTCCTTTGGAACTCCTGGGGGTAAACAGAGATCGAAGGCCCATGTTCTGGCTGGTGAAGACCGATCAAAGTTTGAAGGCTTTATCAGTAGACGTGGATCTGAACTCTCACTGAGGTTTCTATGTGAGAAGTTTGGTGTTTCATTGTTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAGGTGCTTAAGCCTAGCTCTGCAGAATCTCTTGCTGCTTCTGAGAAAGAAATCTCTTTGGTTATAGAGTCTGTCGGCAATCCCCAGACCTTGATTAACAATATTCAGGTGATACGCTCTATTTCTCCCCTCCTGCATGAGGATTTGAAGCCAAAATTATTTAAACTTCTCCCTTGCATTTTCAAATGTGTTAAGCATCCTCATGTTGCTGTTAGATTAGCAGCTTCACGCTGCATTACTTCAATGGCCAGGTCAATGACTTTAAAAGTTATGGGTGCTGTGGTTGAAAATGCTGTCCCTATGTTAGCAGACGCTTCATCAGTTCATGCTCGGCAAGGAGCTGGCATGCTCATTAGTTTTCTTGTTCAGGGGCTTGGAGTTGAGCTGGTCCCTTATGCTCCTCTCTTGGTAGTTCCACTTCTTCGGTGTATGAGTGATTGTGATCAGTCCGTGAGACAGAGTGTTACACATAGCTTTGCCACTCTTGTACCTTTACTTCCTTTAGCACGGGGCCTTCCTCCACCACTTGGTTTAGGGGAGGGTTTATCTGGAAATACAGAAGATGTAAAATTTCTGGAGCAACTACTTGACAATTCTCATATTGAAGATTATCAGTTGTGCACTGAATTGAAAGTAACATTGAGAAGGTATCAACAGGAAGGTATAAATTGGTTGGCTTTCTTAAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAAACTCTTCAAGCATCAGCAATTGTGGCATCTGAAATAGCTGAGCGTCAAAGTCTGAATGATAAGGAGGAACTTCTTCCGTCTTTAATCATTTGCCCATCAACTCTTGTTGCACATTGGGCTTTTGAGATAGAGAAATATATTGATGTTTCTCTCGTATCTACTCTTCAATATGTTGGTTCTGCTCCAGAGCGGATGTCTACTAGAGATAATTTTTGCAAGCATAATGTCATCATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTAGTTCAGCTGCAATGGAATTACTGCATTTTAGATGAAGGACATATAATCAAGAATGCCAAGTCCAAAGTAACTCTAGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGAACACCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCAGGATTTCTTGGTACAGAAAGACAGTTCCATGCCACTTATGGGAAACCACTCCTAGCTGCAAGAGATCCCAAGTGCTCTGCTAGGGATGCTGAAGCTGGAATTCTTGCTATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTTCTCCGTAGAACAAAGGAAGAAGTCTTGTCGGATCTGCCAGAAAAAATAATTCAAGACAGATACTGTGATTTAAGTCCTGTACAGCTTATACTCTATGAACAATTTTCTGGTTCTCGAGTCAAACAAGAAATCTCATCTATAGTAGCAATGAATGAATCAGCTACGACAGAAGGAAGCAGCAGATCACCCAAAGCATCTTCACACGTTTTCCAGGCACTTCAATATTTGCTAAAGTTGTGCAGTCATCCTTTGCTTGTTGTTGGTGAGAAGATTCCTGATCAACTCTCTACCGTTCTCTCAGAATTGTTGCCTGCTGGCTCTGAAATCATTTCAGAACTTCACAAACTACATCATTCCCCAAAATTGGTGGCTCTCCAGGAGATCTTGGAAGAATGTGGAATAGGAGTTGATTCTTCAGGTTCTGAGGGTTCTGTTAGCATTGGTCAGCACAGGGTTTTGATATTTGCTCAACATAAGGCTTTTCTGGATATTATTGAAAGGGACTTATTCCAGACATATATGAAGAATGTCACATATTTGCGACTGGATGGATCTGTTGATCCGGAGAAGCGTTTTGAAATTGTCAAAACATTCAATTCAGACCCTACCATTGATGTATTGTTGCTTACAACGCATGTGGGTGGGCTTGGTTTGAACCTGACATCCGCTGATACCCTTGTTTTTGTGGAGCATGATTGGAATCCAATGCGAGATCATCAGGCAATGGACAGAGCACACCGTTTAGGGCAGAAAAAAGTTGTCAATGTCCACCGTCTAATAATGCGTGGTACTTTAGAAGAGAAAGTCATGAGTCTACAAAGGTTCAAAGTTTCAGTGGCTAATGCTGTCATTAATGCTGAAAATGCCAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTGTTCACATCGGCAGAAACCTTGAAGAAGGGAGCTTCTGCTGCGAACCGATCAGATAACATCGATGGAGATACTAAATCCGGGGGCAGTGGGAAGGGGTTGAAAGCAATACTAGGAGGTTTGGGCGAACTTTGGGACCATTCACAGTATACAGAAGAGTACGATCTAACTCAATTTTTGTCAAAGCTCAATGGCTGA 6150 0.4154 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLISLLKKVSQYLHSKTWDTRVAAAHAIGAIAENVKHTSLSELIATVATKLSEAGISGSVEDICAWPYLQSRITGSAFRSFDLNKVLEFGALLASGGQEYDIGSDNVKNPKERLARQKQNLRRRLGLDVCEQFMDISDVIRDEDLMAFKSDIHPYGIDHRVFTSRSVHNIQKMVANMVPSVKSKWPSARERNLLKRKAKMNSKDQTKGWCEDGSAEASLAQNATSGGTYPDSVNCNKAFIYGNHDEDGFDHDGDGRWPFHIFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVLKPDSRLGGELVLELEDRNVSNVLKRDREIDLNMQISVDEFESNFKRPKLEDVSSTSMDGRTICSNGGDIEISIGTETLGCGLPMDDRNGQVNDSSVGLDLKSYSEGLCHSCKEPANIAEQKDYSGEDKIPSGNLNELPQNCELVNLLNVTKSSWLQNYGFLQDCVMRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGASFKYMRPALVNETLNILLKMQCRAEWEIRHGSLLGIKYLVAVRQEMLPELLGRVLPACKFGLEDPDDDVRAVAADALIPAAAAIVALPGQTLHLIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQDEMVPKMNQAIDLGDTEMVTLIGVGGSGDSDHDKNPYMLSMLAPRLWPFMRHSITSVRFSAIRTLERLLEAGYKRSMSEQCCSSFWPSFILGDTLRIVFQNLLLESNEAILQCSERVWRLLVQCPVEDLEMAARSYMNSWIELASTPFGSALDTSKMFWPVTFPQKSQSRAAAKMRAVKIENEYGGDLGSDSTKGINLQERNGDVSMGSVKIVVGADVDTSVTNTRVITATALGIFASKLPEDSIKDVIDPLWNALTSLSGVQRQVASLVFISWFKEIKRSQISENLKIIPGVPNYVKDWLLDLLACSDSAFPTKDSCLPYAELSRTYSKMRSEAGQLLNAMKCSGIFDDLLSTMKVELESMSVDDAINFASKVPALSSESSGNEFSGRNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPSRLTPIILPLMASIKREQEEILQMKSAEALAELMYHSVERRPCPNDKLIKNICGLTCMDPSETPQAEFIRSMDSIDDQGLMSFGTPGGKQRSKAHVLAGEDRSKFEGFISRRGSELSLRFLCEKFGVSLFDKLPKLWDCLTEVLKPSSAESLAASEKEISLVIESVGNPQTLINNIQVIRSISPLLHEDLKPKLFKLLPCIFKCVKHPHVAVRLAASRCITSMARSMTLKVMGAVVENAVPMLADASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFATLVPLLPLARGLPPPLGLGEGLSGNTEDVKFLEQLLDNSHIEDYQLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEIAERQSLNDKEELLPSLIICPSTLVAHWAFEIEKYIDVSLVSTLQYVGSAPERMSTRDNFCKHNVIITSYDVVRKDIDYLVQLQWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFHATYGKPLLAARDPKCSARDAEAGILAMEALHKQVMPFLLRRTKEEVLSDLPEKIIQDRYCDLSPVQLILYEQFSGSRVKQEISSIVAMNESATTEGSSRSPKASSHVFQALQYLLKLCSHPLLVVGEKIPDQLSTVLSELLPAGSEIISELHKLHHSPKLVALQEILEECGIGVDSSGSEGSVSIGQHRVLIFAQHKAFLDIIERDLFQTYMKNVTYLRLDGSVDPEKRFEIVKTFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFTSAETLKKGASAANRSDNIDGDTKSGGSGKGLKAILGGLGELWDHSQYTEEYDLTQFLSKLNG 2049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1107 2049 CDD SF2_C_SNF 1801 1943 - -
Alju02g1107 2049 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1822 1978 IPR001650 -
Alju02g1107 2049 Pfam Helicase conserved C-terminal domain 1832 1932 IPR001650 -
Alju02g1107 2049 CDD DEXHc_Mot1 1454 1686 IPR044078 GO:0005524
Alju02g1107 2049 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1466 1636 IPR014001 -
Alju02g1107 2049 SMART ultradead3 1450 1647 IPR014001 -
Alju02g1107 2049 Gene3D - 1696 2011 IPR027417 -
Alju02g1107 2049 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1424 1685 - -
Alju02g1107 2049 FunFam TATA-binding protein-associated factor 172 1696 2013 - -
Alju02g1107 2049 Pfam SNF2-related domain 1472 1768 IPR000330 GO:0005524|GO:0140658
Alju02g1107 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1687 1988 IPR027417 -
Alju02g1107 2049 Gene3D - 1426 1685 IPR038718 -
Alju02g1107 2049 SMART helicmild6 1846 1932 IPR001650 -
Alju02g1107 2049 FunFam TATA-binding protein-associated factor BTAF1 1202 1412 - -
Alju02g1107 2049 Pfam Domain of unknown function (DUF3535) 781 1238 IPR022707 -
Alju02g1107 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1432 1686 IPR027417 -
Alju02g1107 2049 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Alju02g1107 2049 Gene3D - 508 787 IPR011989 -
Alju02g1107 2049 SUPERFAMILY ARM repeat 6 1491 IPR016024 -
Alju02g1107 2049 Gene3D - 3 95 IPR011989 -
Alju02g1107 2049 Gene3D - 1209 1411 IPR011989 -
Alju02g1107 2049 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2048 IPR044972 GO:0003677|GO:0016887|GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1107 Alju-ChrAlju02 8999983 9019788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1107 1426 1986 RAD5 or RAD16-like Gene Family AT1G02670 26.400 4.51e-44 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju02g1107 DUF3535 7.3e-101 No_clan