Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1103 ATGAAAAAGAGGGGTTCTAGTAAGAAGGAAGAGATCATGGGAAGAGGGAAGATAGAAATAAAGAGGATAGAGAACACAACGAATCGCCAAGTGACATTCTGCAAGAGAAGGAATGGTCTTCTCAAGAAGGCCTATGAGCTTTCTGTACTCTGCGACGCTGAAGTTGCCCTAATTGTTTTCTCCAGCAGAGGCCGCCTCTACGAATATTCTAACAACAACATAAGGTCAACTATAGAGAGGTACAAGAAGGCATGTTCAGATAATTCAGGTGCAAGCTCTATTACTGAGATCAATGCTCAGTATTATCAGCAAGAATCGGCGAAGCTGCGTCAGCAAATTCAGATGCTTCAAAATTCAAACAGGCACTTGATGGGTGATGCGTTGAGCACACTCACAGTGAAGGAACTGAAGCAGCTGGAAAATAGACTCGAAAGAGGAATATCTCGTATCAGGTCTAAGAAGCATGAGATGCTGCTGGCAGAAATCGAATACAGGCAAAAAAGGGAGATTGAGCTGGAGAATGAAAATATGTGCCTTCGGACAAAGGTGGGAGAAATGGAGAGGGTGGAGCAGGAAGCAAACATGGTGTCAGCAGGAGAGGAACAGCAGCTGAGTGCGATGCAGCAAGCTTTGGCTTCTCGCAATTTCTTCAATCCAACAACCATCATGGACCTTTCTGCAACTCCCTACCCTCACTCTGACAAGAAATTGCTTCATCTCGGGTAA 726 0.449 MKKRGSSKKEEIMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDNSGASSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGISRIRSKKHEMLLAEIEYRQKREIELENENMCLRTKVGEMERVEQEANMVSAGEEQQLSAMQQALASRNFFNPTTIMDLSATPYPHSDKKLLHLG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1103 241 Gene3D - 26 88 IPR036879 GO:0003677|GO:0046983
Alju02g1103 241 Pfam K-box region 98 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju02g1103 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 190 - -
Alju02g1103 241 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Alju02g1103 241 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Alju02g1103 241 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Alju02g1103 241 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Alju02g1103 241 Coils Coil 133 156 - -
Alju02g1103 241 SUPERFAMILY SRF-like 14 86 IPR036879 GO:0003677|GO:0046983
Alju02g1103 241 Coils Coil 99 119 - -
Alju02g1103 241 FunFam agamous-like MADS-box protein AGL11 25 108 - -
Alju02g1103 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 69 IPR002100 GO:0003677|GO:0046983
Alju02g1103 241 ProSiteProfiles K-box domain profile. 99 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju02g1103 241 CDD MADS_MEF2_like 14 87 IPR033896 GO:0000977|GO:0045944
Alju02g1103 241 ProSitePatterns MADS-box domain signature. 15 69 IPR002100 GO:0003677|GO:0046983
Alju02g1103 241 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1103 Alju-ChrAlju02 8969489 8975475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1103 12 241 MADS-box Gene Family AT4G09960 71.489 1.35e-114 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju02g1103 K-box 1.5e-26 No_clan