Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1082 ATGGCAGCCACTACTACTACAACCGCCGCGCCGTCGCGCCAACTATCCCAGAAGGAGGCTGACATTCAGTTGATGTTGGCCGCGGAGGTTCACCTTGGGACAAAAAATTGTAACTTTCAAATGGAGCGGTATGTCTTCAAGCGCCGCAACGATGGTATTTACATAATCAACCTTGGGAAGACTTGGGAAAAGCTCCAGCTTGCTGCTAGGGTTATTGTTGCCATTGAGAACTCTAAGGACATTATTGTTCAGTCTGCTAGGCCTTATGGTCAGAGAGCAGTTCTCAAGTTTGCTCAATACACAGGTGCTCATGCTCTTGCTGGAAGGCATACTCCTGGAACATTCACTAACCAGCTCCAGACATCCTTTAGTGAGCCTCGCCTTCTCATTCTGACTGATCCAAGAACAGATCATCAGCCCATTAAGGAAGCTGCGCTTGGAAATATACCGACTATTGCTTTCTGTGACACTGACTCTCCCATGAGATATGTTGACATCGGTATTCCTGCCAACAATAAGGGAAAGCACAGCATAGGTTGTCTCTTTTGGCTATTGGCAAGGATGGTTCTGCAGATGAGGGGCACTATTCGTCCAGGGCACAAGTGGGACGTGATGGTGGACTTGTTCTTCTATAGAGAACCTGAGGAGACCAAGCAACAAGAGGAAGATGAAACTCCTGTTGCTCCAGACTATGCTATTACAGACTTCAATGCTGCCGGCATTGCTTCTGATGACCAGTGGCCTGCTACCATTGATCAGACACGGACAACTGAGGCAGTCCCACAGCCGCCTATTGCTGCAGCTCCTGGTGTCACTTGGGCTGCAGATGCTACTGGAGAATGGGGTGACTCTGTGGCACTTGCCCCTGCAGCTCCAGTCCAACAAATTCCTACCCCCGGAATTGGAGAATGGGGTGACTCTGTGGCACTTCCCCCCCCAGGAATTGGGGATGTGCCTGCCACCGGCTGGGAGTAA 975 0.5046 MAATTTTTAAPSRQLSQKEADIQLMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENSKDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKQQEEDETPVAPDYAITDFNAAGIASDDQWPATIDQTRTTEAVPQPPIAAAPGVTWAADATGEWGDSVALAPAAPVQQIPTPGIGEWGDSVALPPPGIGDVPATGWE 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1082 324 Gene3D - 21 226 - -
Alju02g1082 324 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju02g1082 324 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju02g1082 324 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju02g1082 324 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju02g1082 324 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju02g1082 324 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju02g1082 324 Pfam Ribosomal protein S2 25 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju02g1082 324 Pfam Ribosomal protein S2 124 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju02g1082 324 ProSitePatterns Ribosomal protein S2 signature 1. 22 33 IPR018130 GO:0003735|GO:0005840|GO:0006412
Alju02g1082 324 MobiDBLite consensus disorder prediction 297 324 - -
Alju02g1082 324 NCBIfam 30S ribosomal protein S2 18 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Alju02g1082 324 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Alju02g1082 324 PANTHER 40S RIBOSOMAL PROTEIN SA 12 286 IPR005707 GO:0003735|GO:0006412|GO:0015935
Alju02g1082 324 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Alju02g1082 324 FunFam 40S ribosomal protein SA 21 227 - -
Alju02g1082 324 Hamap 40S ribosomal protein SA [rps-0]. 9 250 IPR027498 GO:0003735|GO:0006412|GO:0015935
Alju02g1082 324 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1082 Alju-ChrAlju02 8804849 8807635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1082 1 275 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 76.259 3.94e-150 421