Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g1005 ATGGGAGCTGAACATGGAGGTGGAGATCGTGGCGGCTTAGGTGGTTGTGGAGGACGTGCTGAAAGTGTCGGCCTCTTCTTCAAAATTGAAGTTCTGGAATCCGGCGATTCGACGGAGGGAGTAAGGACGGAGGAAGACTGGTTGGAAAAAGATTGGGATGCGAGTTTGGTCTGGTGCAGCAGGGATGTTAATATGGCATCTTATCGTTTGGCTAAAGAAGCTCATGAGCTCGCAGATGGTTTTCATTTGTTTAGTAGTGTCCCTTCATTTTTGTTTGATGTCATCATTCATGCAGTTGTAGAGAACACTTTCTCACTCTCTCCATCAATAGCAACAAGTAAGATGCAGATCTTCGTGAAAACTTTGACGGGAAAGACTATCACTCTCGAGGTCGAGAGTAGTGACACCATAGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTGCTGATTATAACATTCAAAAGGAATCTACACTTCATTTAGTCTTGAGGCTTAGAGGAGGGACTATGATCAAGGTGAAAACTCTTACTGGGAAAGAAATTGAAATCGACATAGAGCCAACGGATACAATTGACCGGATCAAGGAACGTGTTGAAGAGAAAGAGGGGATTCCACCTGTGCAGCAGAGGCTCATATATGCTGGGAAGCAACTCGCAGATGATAAAACAGCAAAGGAGTACAACATTGAAGGTGGTTCTGTGCTCCATCTGGTGCTTGCCCTTAGGGGTGGTAGTCTTTAG 807 0.4585 MGAEHGGGDRGGLGGCGGRAESVGLFFKIEVLESGDSTEGVRTEEDWLEKDWDASLVWCSRDVNMASYRLAKEAHELADGFHLFSSVPSFLFDVIIHAVVENTFSLSPSIATSKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGSL 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g1005 268 ProSitePatterns Ubiquitin domain signature. 217 242 IPR019954 -
Alju02g1005 268 Pfam Ubiquitin family 117 188 IPR000626 GO:0005515
Alju02g1005 268 Pfam Ubiquitin family 193 264 IPR000626 GO:0005515
Alju02g1005 268 PRINTS Ubiquitin signature 167 188 IPR019956 -
Alju02g1005 268 PRINTS Ubiquitin signature 125 145 IPR019956 -
Alju02g1005 268 PRINTS Ubiquitin signature 146 166 IPR019956 -
Alju02g1005 268 CDD Ubl_ubiquitin 115 190 - -
Alju02g1005 268 SUPERFAMILY Ubiquitin-like 108 190 IPR029071 -
Alju02g1005 268 SUPERFAMILY Ubiquitin-like 192 266 IPR029071 -
Alju02g1005 268 ProSiteProfiles Ubiquitin domain profile. 191 266 IPR000626 GO:0005515
Alju02g1005 268 FunFam Polyubiquitin 3 115 190 - -
Alju02g1005 268 Gene3D - 193 268 - -
Alju02g1005 268 Gene3D - 109 192 - -
Alju02g1005 268 SMART ubq_7 115 186 IPR000626 GO:0005515
Alju02g1005 268 SMART ubq_7 191 262 IPR000626 GO:0005515
Alju02g1005 268 FunFam NEDD8 protein 191 268 - -
Alju02g1005 268 CDD Ubl_NEDD8 193 266 IPR038738 -
Alju02g1005 268 ProSitePatterns Ubiquitin domain signature. 141 166 IPR019954 -
Alju02g1005 268 ProSiteProfiles Ubiquitin domain profile. 115 190 IPR000626 GO:0005515
Alju02g1005 268 PANTHER UBIQUITIN 115 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g1005 Alju-ChrAlju02 7779883 7784000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g1005 193 266 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 62.162 9.52e-26 97.1