Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0915 ATGGCTGCGGTTGCTGAGATTTCCGTTGATTCAGCCGCTGCCACCAAATTGGACTCAAAGCCGAAGCCTGATACCAAATTTAATGTACAGAAGCTTGTTGATATGTTTACAAAGCTGAATCCTTCAGCTAAAGAGTTTATACCATCATCGCATTCTCATAATCATCTTCGTCATCTGAGCTCGAATCAGTTCTTTCCCAACAATTTTCTGGTTAAGCCATCAGACAATGACAATTACTCAAACAACCGGAGGAGAAGAAACAATTTCAATCAGGGAAGAAGGCTGAATGGAAGAGTGCATAAGGCTCAAAGAGAAGACAGCATTAGAAGAACAGTATATGTTTCTGACATTGATCAGCATGTAACTGAGGAGCGGCTTGCGGCCTTATTTTCCAGTTGTGGACAAGTAATTGATTGCCGAATCTGTGGTGATACACATTCAATCCTTCGTTTTGCATTTGTGGAGTTTGCAGATGAACGGGGTGCAAGAGCAGCTCTAAACCTTGGTGGTACTGTACTTGGCTATTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTACCCAGGTCAGATGATGAGAGGGAGATGTGTAGTAGGACTGTTTATTGTACAAATATTGACAAAAAGGTTTCTCAGGCTGAAGTGAAGAGTTTTTTTGAAACAGCTTGCGGAGAGGTTACGCGCTTGAGGCTTTTAGGGGATCATGTGCATTCAACCCGAATTGCTTTTGTGGAATTTGCAATTGCAGAAAGTGCCATTTTTGCTCTAGGTTGTAGTGGGATGCTCTTGGGAACTCAGCCTATCAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCAAGGATCGCTCATCCGATGTCGTGTTGA 888 0.4336 MAAVAEISVDSAAATKLDSKPKPDTKFNVQKLVDMFTKLNPSAKEFIPSSHSHNHLRHLSSNQFFPNNFLVKPSDNDNYSNNRRRRNNFNQGRRLNGRVHKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDTHSILRFAFVEFADERGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQAEVKSFFETACGEVTRLRLLGDHVHSTRIAFVEFAIAESAIFALGCSGMLLGTQPIRVSPSKTPVRPRIAHPMSC 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0915 295 SUPERFAMILY RNA-binding domain, RBD 110 189 IPR035979 GO:0003676
Alju02g0915 295 CDD RRM1_CID8_like 108 187 IPR034823 -
Alju02g0915 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 174 IPR000504 GO:0003723
Alju02g0915 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 276 IPR000504 GO:0003723
Alju02g0915 295 SMART rrm1_1 208 279 IPR000504 GO:0003723
Alju02g0915 295 SMART rrm1_1 111 181 IPR000504 GO:0003723
Alju02g0915 295 MobiDBLite consensus disorder prediction 1 24 - -
Alju02g0915 295 MobiDBLite consensus disorder prediction 72 102 - -
Alju02g0915 295 Pfam Ataxin-2 C-terminal region 35 51 IPR009818 -
Alju02g0915 295 Gene3D - 195 288 IPR012677 -
Alju02g0915 295 Gene3D - 71 186 IPR012677 -
Alju02g0915 295 CDD RRM2_CID8_like 203 284 IPR034825 -
Alju02g0915 295 FunFam Polyadenylate-binding protein-interacting protein 10 201 279 - -
Alju02g0915 295 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 288 - -
Alju02g0915 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 185 IPR000504 GO:0003723
Alju02g0915 295 FunFam Polyadenylate-binding protein-interacting protein 11 75 187 - -
Alju02g0915 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 283 IPR000504 GO:0003723
Alju02g0915 295 SUPERFAMILY RNA-binding domain, RBD 197 288 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0915 Alju-ChrAlju02 6868031 6871758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0915 107 264 Eukaryotic Initiation Factors Gene Family AT1G34140 26.087 5.84e-11 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0915 02 6868031 6871758 Alju02g0915 02 6868031 6871758 ECH