Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0854 ATGAAGATTCAGTGCAGTGTGTGTGAAGCTTCGGAGGCTAAGGTTTTGTGTTGCGCCGACGACGCGGCTCTGTGTTGGGAATGTGACGAGAAGGTCCATGCCGCTAATAAGCTTGCCGGCAAGCACCAGAGAGTACCTCTTTCTTCCTCTGGCTCTAACATGCCCAAGTGTGATATTTGTCAGGAATCGTTTGGCTATTTCTTCTGTCTAGAGGACAGAGCTTTACTCTGCAGAAAATGTGATGTGGCGATACACACAGCAAATTCCTATGTGTCCACTCATCAGAGGTTTCTGCTGGCTGGCATAAGAGTAGGACTTGAAGTTACTGAGCCCGGTGCTTCCTCATCTTCTGCAAAGTCACAATCCGAGGAGAAGATGTCAGATACAAAATCATCTTCTGCTTCTAGAAGGGTTTCCTCAGTACCTGAGTCATCTGAACAAGGTGGAGGAGGAGATGGGCAGTTTCCGCCTTCTAAGGTGTCATATGGTGGTGGTTCAGCTCCTGCAAACACATCAAACTGGCCCATTGATGATTTTTTTGGTTTAAATGAATTCACTCAGAATAAAAATTGCATGGACAATGAACCATCCAAGGATGACAGTGGGAAGCCTGGGGATTCTGATTCTCCTGGTTTTAAATCCAGTGAAGAGGAAATAGATGAAGAAGAAGATGATGACTGCTTAGGGCGATTTTCGGATTCATCTGGGAGAGTTCCTCAGATCTCTTCCCCTCCTACAGCTTCAGGATTATATTGTCCTAAAGACACTCAATATACACCTTACAATGCTATGTTTGCTCATGTTCCAGATATATTCTTTTCTGACTCACAACAGTTCAACCGTGTTCAGAATCGTCGTATTTTATCAAAACGACATTGGCAACCATAG 888 0.4459 MKIQCSVCEASEAKVLCCADDAALCWECDEKVHAANKLAGKHQRVPLSSSGSNMPKCDICQESFGYFFCLEDRALLCRKCDVAIHTANSYVSTHQRFLLAGIRVGLEVTEPGASSSSAKSQSEEKMSDTKSSSASRRVSSVPESSEQGGGGDGQFPPSKVSYGGGSAPANTSNWPIDDFFGLNEFTQNKNCMDNEPSKDDSGKPGDSDSPGFKSSEEEIDEEEDDDCLGRFSDSSGRVPQISSPPTASGLYCPKDTQYTPYNAMFAHVPDIFFSDSQQFNRVQNRRILSKRHWQP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0854 295 CDD Bbox1_BBX-like 5 47 - -
Alju02g0854 295 Gene3D Classic Zinc Finger 1 93 - -
Alju02g0854 295 MobiDBLite consensus disorder prediction 132 147 - -
Alju02g0854 295 MobiDBLite consensus disorder prediction 111 168 - -
Alju02g0854 295 MobiDBLite consensus disorder prediction 187 253 - -
Alju02g0854 295 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Alju02g0854 295 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 271 - -
Alju02g0854 295 SMART bboxneu5 52 99 IPR000315 GO:0008270
Alju02g0854 295 SMART bboxneu5 4 47 IPR000315 GO:0008270
Alju02g0854 295 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Alju02g0854 295 MobiDBLite consensus disorder prediction 193 214 - -
Alju02g0854 295 MobiDBLite consensus disorder prediction 235 253 - -
Alju02g0854 295 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Alju02g0854 295 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Alju02g0854 295 FunFam B-box zinc finger protein 22 1 93 - -
Alju02g0854 295 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0854 Alju-ChrAlju02 6393242 6395168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0854 1 286 C2C2-CO-like Transcription Factor Family AT1G78600 45.289 1.69e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Alju02g0854 zf-B_box 2.3e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0854 02 6393242 6395168 Alju02g0854 02 6393242 6395168 ECH