Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0820 ATGTCTCTCATCAGAGTTTTTCGTTCTCGCAAGTTCTCCAGATCGTTTAGGGGAACTGGGGCTCTGGATGAGGACGACCGGAGGAACGGGATCGGTGGAGGCGATGGGGCTGAGGCCGGTGACGACCCGGCTTACGGCAATGCGTGGTCCACCATGCTGCCGGAGCTTCTTGCCGAGATCATACGGCGGATGGAGGTCAGCGAGGAGCGGTGGCCCCACCGCCAACACGTTGTCGCTTGTGCGGGCGTCTGTAAGAGGTGGAGGGAGATGACTCGTGAGATCGTACGGTCCCCTTCTCAGAGCAGCAAAATTACTTTCCCTTCTTGCCTTAAAGAGCCAGGGCCACGTGATTCACCCCACCAATGTCTTATAAAGCGAAACAAGAGGACTTCAACATTTTACCTATATCTTGCCCTTACACCATCTTTCGCAGATAAGGGGAAGTTTCTCTTAGCAGCTAGGAGATATAGGCGTGGTGCTAATACTGAATATATCATATCACTTGATGCTGAGGACTTTTCCCAAGGAAGCAATGCTTACGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACTATCTATGACAGCAAGCCACCCCATAATGGCGCAAAGCCATCGAGCTGCAGGGCAAGCCGTAGATTTACGAGCAAGCAGATATGCCCGCAGGTTCCTGCAGGTAACTTTGAGGTGGGACATGTCTCATACAAGTTCAACATTTTGAAGTCAAGGGGGCCGAGAAGGATGGCTTGCACAATGAAGTGCCCCTTTCCTCTTCCAGGGGAAAGTTCAGATAAAAATCTGGATGCCGCAGATAAGACAAACAATAAAGAACATGTTGCTCCTGGCTACTCAATATTGAAGAACAAAGCTCCAAGATGGCATGAACATTTGCAGTGTTGGTGCTTGAATTTCCATGGCCGTGTGACTGTGGCGTCAGTGAAAAACTTTCAGCTGGTTGCCACAGTGGATCAGAGCCAACCAGGCGGAAAAGGAGACGAGGAAACAGTTCTCCTGCAGTTTGGGAAGGTTGCGGATGATACCTTCACCATGGATTATAGGCAGCCCTTATCAGCCTTCCAGGCTTTTGCTATTTGCCTAACAAGCTTTGGCACTAAACTGGCGTGTGAGTGA 1137 0.5013 MSLIRVFRSRKFSRSFRGTGALDEDDRRNGIGGGDGAEAGDDPAYGNAWSTMLPELLAEIIRRMEVSEERWPHRQHVVACAGVCKRWREMTREIVRSPSQSSKITFPSCLKEPGPRDSPHQCLIKRNKRTSTFYLYLALTPSFADKGKFLLAARRYRRGANTEYIISLDAEDFSQGSNAYVGKLSSDFLGTNFTIYDSKPPHNGAKPSSCRASRRFTSKQICPQVPAGNFEVGHVSYKFNILKSRGPRRMACTMKCPFPLPGESSDKNLDAADKTNNKEHVAPGYSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVADDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0820 378 ProSitePatterns Tub family signature 2. 363 378 IPR018066 -
Alju02g0820 378 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Alju02g0820 378 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Alju02g0820 378 PRINTS Tubby superfamily signature 288 305 IPR000007 -
Alju02g0820 378 PRINTS Tubby superfamily signature 335 354 IPR000007 -
Alju02g0820 378 PRINTS Tubby superfamily signature 306 322 IPR000007 -
Alju02g0820 378 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Alju02g0820 378 PRINTS Tubby superfamily signature 356 378 IPR000007 -
Alju02g0820 378 MobiDBLite consensus disorder prediction 19 43 - -
Alju02g0820 378 Pfam Tub family 110 373 IPR000007 -
Alju02g0820 378 SUPERFAMILY Tubby C-terminal domain-like 98 378 IPR025659 -
Alju02g0820 378 ProSitePatterns Tub family signature 1. 306 319 IPR018066 -
Alju02g0820 378 Gene3D Tubby Protein; Chain A 105 378 IPR025659 -
Alju02g0820 378 PANTHER TUBBY-RELATED 41 376 - -
Alju02g0820 378 Pfam F-box domain 54 96 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0820 Alju-ChrAlju02 6070623 6073762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0820 1 378 TUB Transcription Factor Family AT1G53320 70.052 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Alju02g0820 Tub 3.8e-101 CL0395