Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0789 ATGGTGGCAGCTTCAGGAAACACCAGTAACATTGATTCCCACTATTCGCCTGATGCTTATGACAACGGTTTGATGTATGGAATGACACAGTTTAACGGGGTTCATCATCAACCCAATCTTGACGTGGGTGTTACTGCATCACCTAGCTTGTTTTTTCCTGCAATTAATCCTGCCTCTGGTGCTGGTGTAGCGCCTCAGCCCATTAATTACCGAGCAACTGATCAATTGCCAGCTCCAGGCACATATGCTGTCTCTGGAATTTTAATGGATGATGCAAGATATCCATACAAACAAAAAATTGCTGAGGGCATCAGAGGAAATTACCAACATTTTAATGCTTCAGCTAGTTCTTCGGTAGCTCCTCCAAATGCTAGGCACTCTGTTGGGGTTACTGCATCGTTTTCTTTGCCCCAGTTTAGAGGAAATCACATTCCACCACTTGTAGAAGTTGGACCTCATGGTAGTTTGTGGAGCACATCTGGTGACTCAGTTATGGTGCATGAACACAACCATTTGATTCGAGGAAACTATTTGGGCCAGCATTTTCAACCTGCTCCACCTCCCTGGTTGGACCGGCAGTTGAACGGTACCAACACTGAAGGATATAATATGGCCTGGAATCAATCTCATTCAATGCCTAATGTGCAAGCTGCTGTTAATGGAAATTCATTGGAGAATGCAAATACAGGTATGCAGAGATATCATGATGCAGCTAGCAACAGAAGCAGCCTCGGGTTTGCTCATCCTCCTCCTGTTAACCACCAGCACCATAATTATCACCTTCCAACTCTACCTATGCAAGGAGTAAGAGGCCACAATATCACCTTTCCCCCTCCAGTTACCGCAACTACTTATAGAGGAGTTCCATCAAATTCTTCCCACAGTACCATTATACCGGTGCAGAATGGTTTTGGGTTGGGTGCTAGGCATGTTGGCCCTGCACCATCTGCAAGCCAACGGGTCCATCGTTCTCATAGAGGAGTCATGCCTGATACATCTCTTAGACATCACAATTCCCGTCCAATGAGGTTTTTCCATGTTGATGATGTTGCTTTACTCGATGAAGTGGAAAATTTAGGTGACCATCATCATGGTGATATGCATTTGGACATCGAGGATATGTCTTATGAGGAGCTTCTTGCTTTGGGCGAGCGTATCGGCAATGTCAACACAGGTTTGTCAGAGGAAACTATCACTACTCAATTGAAAACAAAAACTTTCGAGTTCTCCGCTCCCGCTAATCTGGAGGAGGCAGCGTCTGAGGATGACGAGGAACCTGATTCTTGCATCATATGCCTGGAGGAATATAAGAACCAAGAGACGATTGGAATTCTCAAATGTGGGCATGATTATCATGCTGATTGCTTGAAGAAATGGTTGCTGCTGAAGAATGTCTGCCCTATATGCAAATCAGAGGCATTGACCTCTAGAAGGAAGGACGTATAG 1446 0.4495 MVAASGNTSNIDSHYSPDAYDNGLMYGMTQFNGVHHQPNLDVGVTASPSLFFPAINPASGAGVAPQPINYRATDQLPAPGTYAVSGILMDDARYPYKQKIAEGIRGNYQHFNASASSSVAPPNARHSVGVTASFSLPQFRGNHIPPLVEVGPHGSLWSTSGDSVMVHEHNHLIRGNYLGQHFQPAPPPWLDRQLNGTNTEGYNMAWNQSHSMPNVQAAVNGNSLENANTGMQRYHDAASNRSSLGFAHPPPVNHQHHNYHLPTLPMQGVRGHNITFPPPVTATTYRGVPSNSSHSTIIPVQNGFGLGARHVGPAPSASQRVHRSHRGVMPDTSLRHHNSRPMRFFHVDDVALLDEVENLGDHHHGDMHLDIEDMSYEELLALGERIGNVNTGLSEETITTQLKTKTFEFSAPANLEEAASEDDEEPDSCIICLEEYKNQETIGILKCGHDYHADCLKKWLLLKNVCPICKSEALTSRRKDV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0789 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 474 IPR013083 -
Alju02g0789 481 SMART ring_2 429 469 IPR001841 -
Alju02g0789 481 MobiDBLite consensus disorder prediction 312 335 - -
Alju02g0789 481 CDD RING-H2_RNF24-like 427 473 - -
Alju02g0789 481 SUPERFAMILY RING/U-box 421 474 - -
Alju02g0789 481 Pfam Ring finger domain 427 470 IPR001841 -
Alju02g0789 481 ProSiteProfiles Zinc finger RING-type profile. 429 470 IPR001841 -
Alju02g0789 481 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 93 474 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0789 Alju-ChrAlju02 5824883 5827289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0789 337 476 C3H Transcription Factor Family AT2G15530 45.833 2.94e-35 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0789 02 5824883 5827289 Alju02g0789 02 5824883 5827289 ECH