Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0742 ATGCGTCGCCGGCGGAGCTTTTTCCGGCCGTTGATTTTTCCGGCCAATGCTGAACCTAGCCGCTTCCTCAAGATCATACTTCCGGGAGACATTCATGCCCAAAACATGAGAATCCCAAAGGAGTTCGTGAGAAGATTTGAGAATGAACTGTCTACTAGTGAGGCTACGATTGGTGTTCCAGATGGTCGTGTTTGGAAGATGGAACTGAAGAAATCTGAAAACGAAGTTTTGTTCTGCAAGGGTTGGGAGGGATTTGTGAAATATTACTCCCTTAGATTTGGCTTCTTTTTAGTGTTTACATACGAAGGCAATTCACAGTTCAATGTGGTGATCTTTGATCCGAGTGCTGCTGAGATTTACTATCCACGCAAAGTTAACCCTGAGAAGCAGAACTCGGCAACTAAACATAGTAGGAAAAGGCCATCCAGCTTTGATCAATGTGGCTACAACACAAGGAGCCAAAGGCAAAAGCTGGTGGAAGATGAAGAAGAAATAATTGACATAGAGGATGATAATGCATTAAGCCATGGTAAATCAGGAAACAAAGATAGAACTTGGCGAGAAATTTGTAATTCAAGAAAGAATGAGAAAGGGAAAGATAGATCTGGGCAAGGCCATTGTTCCAATATGAAGAATAGGGCTTGGAGTAAAAGAAGGCAAAGAGCTAAGCAAGCTACCCATAATTCCGAAGCAAAATATCCTCTATCTTTTACTGCAACAATAAGGCCAGCGAATCTAAATCGTCATTATATTGATGTGCCGGCTTCATTCTGGAAGGTTTATCTGTGCAAAAATTATCCTATGAAGCTGCAGGATTGTAATGGACGAAAATGGAAGGTCAATTATGTTAAACGCCAGTCACGTCTCCGAATATTGAGGGGTTGGATCAGTTTTGCAAGGGCCAACAATTTGAAGGAAGGAGACCTCTGTGATTTTGAGCTTACCAAGAGGAAGAACTACTTTGTATTTCAATGCTTGAATGGTTTTGGCAGACAGAGTTCTGCAACAGAGCATTGTAACATCGATGTGCTGGCTACCATTTCGAGACCTTATCTGAGGAAAATGAATTATGTGAAGCTGCAGGATTGCGAAGGAAAAAGGTGGGTGGTTAACTCTAGTAAATGGGCTAAATGTTGTTATTTGTCTGACTCTTCTGGGCTCTGGGCTCTGGGCTCTGGCCTCTGGCCTCATTTTGGTGCTGATACTCTCTACCTTCATCTTTTTGTTTTCTGCTTTTGTTGGGGTAAGCTTGTGTGTAAAGCCAGGAATCGGACGTTTTCGGGTTTGAGCTCTTTGCTTTCTGTATCATGA 1311 0.4249 MRRRRSFFRPLIFPANAEPSRFLKIILPGDIHAQNMRIPKEFVRRFENELSTSEATIGVPDGRVWKMELKKSENEVLFCKGWEGFVKYYSLRFGFFLVFTYEGNSQFNVVIFDPSAAEIYYPRKVNPEKQNSATKHSRKRPSSFDQCGYNTRSQRQKLVEDEEEIIDIEDDNALSHGKSGNKDRTWREICNSRKNEKGKDRSGQGHCSNMKNRAWSKRRQRAKQATHNSEAKYPLSFTATIRPANLNRHYIDVPASFWKVYLCKNYPMKLQDCNGRKWKVNYVKRQSRLRILRGWISFARANNLKEGDLCDFELTKRKNYFVFQCLNGFGRQSSATEHCNIDVLATISRPYLRKMNYVKLQDCEGKRWVVNSSKWAKCCYLSDSSGLWALGSGLWPHFGADTLYLHLFVFCFCWGKLVCKARNRTFSGLSSLLSVS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0742 436 Pfam B3 DNA binding domain 238 322 IPR003340 GO:0003677
Alju02g0742 436 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Alju02g0742 436 SUPERFAMILY DNA-binding pseudobarrel domain 235 324 IPR015300 -
Alju02g0742 436 SMART B3_2 237 329 IPR003340 GO:0003677
Alju02g0742 436 SMART B3_2 22 115 IPR003340 GO:0003677
Alju02g0742 436 MobiDBLite consensus disorder prediction 192 229 - -
Alju02g0742 436 SUPERFAMILY DNA-binding pseudobarrel domain 18 115 IPR015300 -
Alju02g0742 436 PANTHER B3 DOMAIN-CONTAINING 19 319 - -
Alju02g0742 436 Gene3D - 14 117 IPR015300 -
Alju02g0742 436 ProSiteProfiles B3 DNA-binding domain profile. 21 115 IPR003340 GO:0003677
Alju02g0742 436 MobiDBLite consensus disorder prediction 192 206 - -
Alju02g0742 436 CDD B3_DNA 236 327 IPR003340 GO:0003677
Alju02g0742 436 MobiDBLite consensus disorder prediction 128 155 - -
Alju02g0742 436 CDD B3_DNA 21 113 IPR003340 GO:0003677
Alju02g0742 436 ProSiteProfiles B3 DNA-binding domain profile. 236 329 IPR003340 GO:0003677
Alju02g0742 436 Gene3D - 215 326 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0742 Alju-ChrAlju02 5471679 5474644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0742 22 322 B3 DNA Binding Superfamily AT3G18990 28.274 5.02e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju02g0742 B3 6.6e-13 CL0405