Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0700 ATGGCCACTGCAGAGCTACACAACTCACGTGCTTCAGGCGTGCACGATAGCCACCACACAACAGATGACGACGAGGATTACAGCGTCACGGACGACGCCGAGGAAGAGACGACGGACGGAGAAGAAGAGACCAACGGAGCTGAAGACGGCGACGACAAGGCGGTGGGGTGGTGCTGGCGGAAGAAAGGCGTGGGCGGAAGCTGCGGTTATGTGGGGAAGGTGTTGGACCCAAGGGCCAAGTGGATTCAAGAATGGAACAGGGTGTTCCTGCTGGTGTGTGCGATGGGGCTGTTCGTGGACCCGCTCTTCTTCTACGCCCTATCGGTGAGCGACACGTGCATGTGCCTCTTCGTCGACGGATGGTTCGCCGTCACCGTCACGGCGCTCCGCTGCATGACGGACGCCTTGCACCTCTGGAACATGTGGCTTCAGTTCAAAATGGGGAAGCGTCACTTTGGAAGTGGCCTAGCCGACGGTAATAACCGTCGCTGGGCGGCTCTTCGCTATCTGAAGCTCAAGACCGGCTTCTTCTTCGACCTCTTCGTCATCCTCCCTTTACCACAGATTGTACTATGGGTTACAATCCCGTATCTGTTGGAGAAAGGGTCAGTGACATTGGTGATGACGGTGTTCTTAATAATGTTTCTGTTTCAATATCTTCCCAAGATATATCACTCCGTTTGCCTCTTGCGACGCCTCCAAAACTTCTCTGGCTACATTTTTGGCACCGTTTGGTGGGGAATTGCCCTCAACATGATCGCCTATTTCGTGGCCTCCCACGCAGCAGGGGCATGCTGGTACTTGCTAGGGATTCAGAGGGCAGCCAAGTGTTTAAAAGAGCAATGTGGGAGAACAGGTGGGTGTGGCTTAAGAATACTGTCGTGTAAGGAAACAGTCTATTATGGAACAAATGGAATGGTGAGGGATAGGGCCAGACTTTCATGGGCAGAGAACAGGCAAGTGAGGTCGACGTGCTTGGATAGCCCTGATAACTACGACTATGGAGCTTATAAATGGACCGTTCAGCTCGTCACCAACGATAGCCGACTTGAAAAGATACTCTTCCCTATCTTTTGGGGCCTCATGACTCTCAGCACTTTCGGGAACCTGGAGAGCACAACGGAATGGCTAGAAGTGGTCTTCAACATCATTGTTTTGACCAGTGGCCTCATTCTTGTCACCATGTTGATTGGAAACATCAAGGTATTTCTGCATGCAACGACATCAAAGAAGCAAGCGATGCAGCTGAAGATGAGGAACATAGAATGGTGGATGAGGAAGAGGCACCTGCCTTCCGGGTTTCGGCAGCGCGTGCGCAACTACGAACGGCAGCGATGGGCCGCCATGCGTGGCGTCGACGAGTTCGAGATGATCAGAAACCTGCCGGAGGGCCTCCGAAGAGACATCAAGTACCATCTCTGCTTGGACTTGGTCCGACAGGTCCCATTATTTCAGCACATGGATGAACTTGTGCTAGAGAACATCTGCGACCGCGTGAAGTCACTCATATTCACAAAAGGAGAAACAATAACGAGAGAGGGAGATCCAGTTCAGAGAATGCTGTTCGTGGTGAGGGGTCACCTTCAGAGCAGTCAGGTGCTGAGAGACGGCGTGAAAAGTTACTGCATGTTAGGGCCGGGGAACTTCAGCGGCGACGAGCTACTGTCGTGGTGTCTGAGGAGGCCGTTCATAGAGCGGCTTCCGCCGTCGTCGTCGACGCTCATCACCCTGGAAACGACGGAGGCGTTTGGGCTGGAGGCGGAGGACGTCAAGTACGTGACGCAGCACTTCAGGTACACGTTCATGAACGACAAGGTGAAGAGGAGCGCCAGGTATTACTCGCCGGGGTGGAGGACTTGGGCGGCGGTGGCGATTCAGCTGGCGTGGCGGAGGCACAAGCACCGTCTGACGTTGGCGTCGCTGTCGTTCATAAGGCCTAGAAGGCCACTGTCCCGGTGCTCTTCCCTTGGAGAGGACAGGCTTCGCCTCTACACTGCCTTGCTCACCTCACCGAAGCCTAATCAGGATGATTTTGACTATTGA 2043 0.5404 MATAELHNSRASGVHDSHHTTDDDEDYSVTDDAEEETTDGEEETNGAEDGDDKAVGWCWRKKGVGGSCGYVGKVLDPRAKWIQEWNRVFLLVCAMGLFVDPLFFYALSVSDTCMCLFVDGWFAVTVTALRCMTDALHLWNMWLQFKMGKRHFGSGLADGNNRRWAALRYLKLKTGFFFDLFVILPLPQIVLWVTIPYLLEKGSVTLVMTVFLIMFLFQYLPKIYHSVCLLRRLQNFSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCGRTGGCGLRILSCKETVYYGTNGMVRDRARLSWAENRQVRSTCLDSPDNYDYGAYKWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLILVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRHLPSGFRQRVRNYERQRWAAMRGVDEFEMIRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFMNDKVKRSARYYSPGWRTWAAVAIQLAWRRHKHRLTLASLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDY 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0700 680 CDD CAP_ED 483 589 IPR000595 -
Alju02g0700 680 Gene3D Helix hairpin bin 408 474 - -
Alju02g0700 680 MobiDBLite consensus disorder prediction 26 48 - -
Alju02g0700 680 SUPERFAMILY Voltage-gated potassium channels 78 404 - -
Alju02g0700 680 SUPERFAMILY cAMP-binding domain-like 409 597 IPR018490 -
Alju02g0700 680 MobiDBLite consensus disorder prediction 1 51 - -
Alju02g0700 680 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 62 640 - -
Alju02g0700 680 Gene3D Jelly Rolls 481 599 IPR014710 -
Alju02g0700 680 MobiDBLite consensus disorder prediction 11 25 - -
Alju02g0700 680 FunFam cyclic nucleotide-gated ion channel 4 481 599 - -
Alju02g0700 680 Pfam Ion transport protein 85 400 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Alju02g0700 680 Pfam Cyclic nucleotide-binding domain 504 591 IPR000595 -
Alju02g0700 680 SMART cnmp_10 483 612 IPR000595 -
Alju02g0700 680 ProSiteProfiles cAMP/cGMP binding motif profile. 483 593 IPR000595 -
Alju02g0700 680 FunFam Cyclic nucleotide-gated ion channel 1 410 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0700 Alju-ChrAlju02 5159181 5164776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0700 71 679 Ion Channels AT5G54250 81.230 0.0 1031