Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0557 ATGCTTCTGCAACAAAAGATGGATGATGCAGAAATTTCAAGTGGTTTTCCTCCTCATCAGAACCCAACTGATCAACATGAATCTAGTAATAACAATCCTCCTGTTTTGAAGAGGAAGAGAAACCTCCCAGGAAATCCAGATCCTGAAGCAGAGGTCATAGCCTTATCGCCGAAGACTCTGATGGCCACAAACAGATTCTTGTGTGAAATCTGTGGGAAGGGGTTCCAAAGGGATCAGAATCTTCAGCTGCATAGAAGAGGACACAATCTTCCATGGAAGCTGAAGCAGAGGACAAGCAAAGAACCAAGGAAGAGAGTGTATGTGTGCCCAGAGAAGACATGTGTGCACCATGACCCTTCAAGGGCTCTGGGGGACTTAACAGGCATAAAGAAGCACTTTTGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGAGATATGCTGTCCAGTCAGACTGGAAAGCCCACTCTAAGACCTGTGGCACCAGAGAATACAAATGTGATTGTGGCACTGTCTTTTCACGGAGAGACAGTTTCATAACTCACAGGGCATTCTGCGATGCCTTAGCAGAAGAGACAGCAAGAGTGAATGCAGCATCTACAATGGCCAACTCCTTTCTGGGTTACACAATCATTGGAAACTCCCAAGGGCCTGCTGGCATAAGCATGACCACTCATTTCCCTTCCATTTTCAAGCCAATTTCAAATACTAGTGTTGCTGAAACAAATCATCAAGCACCTAGTGGGCTCTCTCTATGGATGGCCTCAACTCAAACGTTAACCCAAGGTCCTCCTCACACTCATCCCGACACAATGGTCACTAATTTGAACAGTAATAACAATGACATGTTTGAGATTCATCATCAACTGGGATCAGTCATCACTAGCTCATCATCATCAGGATCAGTACTATACGGGAACAACCCACTTGTGTCATGCCCAAATCCTCAGCTGATGAATTGGGTGTTTGGGAGTGATCATAATAAGAACAGTAGTGATCATCATCATCATCAGCAAGATCAGCTGATCAGTGTTCCTTCCTTGTACAGCTCCCAACATCAGCAATCCCATCAAACATCCTCGGCAAACATGTCTGCCACAGCTTTGTTGCAGAAGGCTGCTCAAATCGGGGCAACTTCAACCGACACGTCATTCCTGGGAACCTTAGGGCTGAAATGTAGCAACAGTAGTCAGGAACAAGAAGGGAACAAAATTTGCGGCATCTATGGTACAGGTTCATCAATACTTGTATCTACCCTTGGAAGCGAGACGACAGAGAACCCTGCAAAATGCAGGAAAATACAGCACAAAGAAGAGATCGGTAATAATGGAGGAGAGCAGACTAGGGATTTTCTGGGTGTGGGCGTAGAATCCATTTGCCATGCTGCTCCAATCAACGGATGGATTTAA 1422 0.4543 MLLQQKMDDAEISSGFPPHQNPTDQHESSNNNPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEPRKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASTMANSFLGYTIIGNSQGPAGISMTTHFPSIFKPISNTSVAETNHQAPSGLSLWMASTQTLTQGPPHTHPDTMVTNLNSNNNDMFEIHHQLGSVITSSSSSGSVLYGNNPLVSCPNPQLMNWVFGSDHNKNSSDHHHHQQDQLISVPSLYSSQHQQSHQTSSANMSATALLQKAAQIGATSTDTSFLGTLGLKCSNSSQEQEGNKICGIYGTGSSILVSTLGSETTENPAKCRKIQHKEEIGNNGGEQTRDFLGVGVESICHAAPINGWI 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0557 473 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Alju02g0557 473 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 458 IPR031140 -
Alju02g0557 473 SMART c2h2final6 142 162 IPR013087 -
Alju02g0557 473 SMART c2h2final6 107 137 IPR013087 -
Alju02g0557 473 SMART c2h2final6 66 88 IPR013087 -
Alju02g0557 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Alju02g0557 473 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Alju02g0557 473 FunFam protein indeterminate-domain 12-like 45 113 - -
Alju02g0557 473 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Alju02g0557 473 MobiDBLite consensus disorder prediction 16 36 - -
Alju02g0557 473 Gene3D Classic Zinc Finger 62 89 - -
Alju02g0557 473 MobiDBLite consensus disorder prediction 1 50 - -
Alju02g0557 473 Gene3D Classic Zinc Finger 100 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0557 Alju-ChrAlju02 4106131 4108198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0557 32 473 IDZ Gene Family AT1G03840 51.303 5.89e-139 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju02g0557 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0557 02 4106131 4108198 Alju02g0557 02 4106131 4108198 ECH